Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CKV84_RS14600 Genome accession   NZ_LT906452
Coordinates   3183856..3185106 (+) Length   416 a.a.
NCBI ID   WP_014842764.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178856..3190106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS14565 (SAMEA4040028_02892) - 3179167..3179466 (-) 300 WP_014842759.1 ArsR/SmtB family transcription factor -
  CKV84_RS14570 (SAMEA4040028_02893) - 3179719..3180063 (-) 345 WP_014842760.1 hypothetical protein -
  CKV84_RS14575 (SAMEA4040028_02894) - 3180180..3180809 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  CKV84_RS14580 (SAMEA4040028_02895) - 3181017..3181511 (-) 495 WP_010948425.1 peptidylprolyl isomerase -
  CKV84_RS14585 (SAMEA4040028_02896) tgt 3181538..3182689 (-) 1152 WP_014842761.1 tRNA guanosine(34) transglycosylase Tgt -
  CKV84_RS14590 (SAMEA4040028_02897) - 3182751..3183242 (-) 492 WP_014842762.1 disulfide bond formation protein B -
  CKV84_RS14595 (SAMEA4040028_02898) - 3183239..3183667 (-) 429 WP_014842763.1 c-type cytochrome -
  CKV84_RS14600 (SAMEA4040028_02899) cqsA 3183856..3185106 (+) 1251 WP_014842764.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  CKV84_RS14605 (SAMEA4040028_02900) - 3185188..3186213 (-) 1026 WP_010948430.1 response regulator -
  CKV84_RS14610 (SAMEA4040028_02901) - 3186495..3187058 (+) 564 WP_014842765.1 HdeD family acid-resistance protein -
  CKV84_RS14615 (SAMEA4040028_02902) - 3187146..3188435 (-) 1290 WP_010948432.1 sensor histidine kinase -
  CKV84_RS14620 (SAMEA4040028_02903) hemC 3188826..3189755 (+) 930 WP_014842767.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46164.62 Da        Isoelectric Point: 8.8154

>NTDB_id=1031678 CKV84_RS14600 WP_014842764.1 3183856..3185106(+) (cqsA) [Legionella pneumophila strain NCTC11985]
MSNTEYQTIDNETQYINGKEKHQNHTYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLNISQHPQLI
TAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLTDYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSNQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQANAD
FLREALSCEGINIGGSNSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISAHHEKSDLLRVIECL
ARLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1031678 CKV84_RS14600 WP_014842764.1 3183856..3185106(+) (cqsA) [Legionella pneumophila strain NCTC11985]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATATATCAATGGAAAAGAAAAACATCAAAACCATACTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTTAATAAGTCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAACATCAGTCAACATCCGCAATTAATT
ACAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCTGCTGTATTTTTAAATAACAGCTCTTTTTT
GCTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTATACCGTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGACTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTGCTCATCGTCGATGAATCTCATTCACTGGGTACGCATGGTTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAACCAAATAGATATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCCTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAGTGGAGAAGAGCAAAATTACAAGCCAATGCTGAT
TTTTTACGAGAAGCCTTATCATGCGAAGGAATTAATATAGGAGGTAGTAATTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGCGCGCATCACGAAAAGTCGGACTTGCTCAGAGTGATTGAATGCCTG
GCCAGACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

44.892

89.423

0.401