Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CKV84_RS13875 Genome accession   NZ_LT906452
Coordinates   3025556..3026347 (-) Length   263 a.a.
NCBI ID   WP_014842650.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020556..3031347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS13860 (SAMEA4040028_02753) legS1 3021702..3022859 (-) 1158 WP_014842647.1 Dot/Icm T4SS effector LegS1 -
  CKV84_RS13870 (SAMEA4040028_02754) dacB 3023671..3025464 (-) 1794 WP_014842649.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  CKV84_RS13875 (SAMEA4040028_02755) spo0J 3025556..3026347 (-) 792 WP_014842650.1 ParB/RepB/Spo0J family partition protein Regulator
  CKV84_RS13880 (SAMEA4040028_02756) ceg33 3026464..3026961 (-) 498 WP_014842651.1 Dot/Icm T4SS effector Ceg33 -
  CKV84_RS13885 (SAMEA4040028_02757) - 3027134..3027883 (-) 750 WP_014842652.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  CKV84_RS13890 (SAMEA4040028_02758) rsmB 3027880..3029163 (-) 1284 WP_014842653.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CKV84_RS13895 (SAMEA4040028_02759) fmt 3029160..3030104 (-) 945 WP_014842654.1 methionyl-tRNA formyltransferase -
  CKV84_RS13900 (SAMEA4040028_02760) def 3030101..3030613 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30073.19 Da        Isoelectric Point: 5.9797

>NTDB_id=1031673 CKV84_RS13875 WP_014842650.1 3025556..3026347(-) (spo0J) [Legionella pneumophila strain NCTC11985]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQVIGEEWSVRHLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1031673 CKV84_RS13875 WP_014842650.1 3025556..3026347(-) (spo0J) [Legionella pneumophila strain NCTC11985]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATTGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACTTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGTTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCATCAGGTTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATCCTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369

Multiple sequence alignment