Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CKV84_RS13115 Genome accession   NZ_LT906452
Coordinates   2868453..2869136 (+) Length   227 a.a.
NCBI ID   WP_014842517.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2863453..2874136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS13095 (SAMEA4040028_02600) - 2863466..2865199 (+) 1734 WP_014842513.1 tetratricopeptide repeat protein -
  CKV84_RS13100 (SAMEA4040028_02601) - 2865306..2866694 (-) 1389 WP_014842514.1 phosphomannomutase/phosphoglucomutase -
  CKV84_RS13105 (SAMEA4040028_02602) dut 2866695..2867153 (-) 459 WP_014842515.1 dUTP diphosphatase -
  CKV84_RS13110 (SAMEA4040028_02603) coaBC 2867180..2868376 (-) 1197 WP_014842516.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CKV84_RS13115 (SAMEA4040028_02604) radC 2868453..2869136 (+) 684 WP_014842517.1 RadC family protein Machinery gene
  CKV84_RS13120 (SAMEA4040028_02605) - 2869172..2869408 (+) 237 WP_014842518.1 hypothetical protein -
  CKV84_RS13125 (SAMEA4040028_02606) lepB 2869488..2873372 (+) 3885 WP_014842519.1 Dot/Icm T4SS GTPase-activating effector LepB -
  CKV84_RS13130 (SAMEA4040028_02607) thpR 2873496..2874059 (-) 564 WP_027220437.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25727.37 Da        Isoelectric Point: 6.7654

>NTDB_id=1031671 CKV84_RS13115 WP_014842517.1 2868453..2869136(+) (radC) [Legionella pneumophila strain NCTC11985]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1031671 CKV84_RS13115 WP_014842517.1 2868453..2869136(+) (radC) [Legionella pneumophila strain NCTC11985]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGGCTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAATTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.925

94.273

0.414

Multiple sequence alignment