Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | CKV84_RS06145 | Genome accession | NZ_LT906452 |
| Coordinates | 1329964..1330989 (+) | Length | 341 a.a. |
| NCBI ID | WP_011213596.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain NCTC11985 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1324964..1335989
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV84_RS06115 (SAMEA4040028_01207) | - | 1325395..1325712 (+) | 318 | WP_011215326.1 | DUF2845 domain-containing protein | - |
| CKV84_RS06120 (SAMEA4040028_01208) | - | 1325749..1326120 (+) | 372 | WP_010947010.1 | protease inhibitor I42 family protein | - |
| CKV84_RS06125 (SAMEA4040028_01209) | - | 1326177..1327892 (-) | 1716 | WP_027220722.1 | NAD-dependent malic enzyme | - |
| CKV84_RS06130 (SAMEA4040028_01210) | - | 1327972..1328355 (+) | 384 | WP_027220721.1 | hypothetical protein | - |
| CKV84_RS06135 (SAMEA4040028_01211) | surE | 1328358..1329116 (+) | 759 | WP_011215330.1 | 5'/3'-nucleotidase SurE | - |
| CKV84_RS06140 (SAMEA4040028_01212) | - | 1329135..1329878 (+) | 744 | WP_027220720.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| CKV84_RS06145 (SAMEA4040028_01213) | rpoS | 1329964..1330989 (+) | 1026 | WP_011213596.1 | RNA polymerase sigma factor RpoS | Regulator |
| CKV84_RS06150 (SAMEA4040028_01214) | hmgA | 1331092..1332342 (-) | 1251 | WP_027220719.1 | homogentisate 1,2-dioxygenase | - |
| CKV84_RS06155 (SAMEA4040028_01215) | - | 1332489..1333232 (+) | 744 | WP_011213598.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CKV84_RS06160 (SAMEA4040028_01216) | ruvC | 1333232..1333756 (+) | 525 | WP_027220718.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CKV84_RS06165 (SAMEA4040028_01217) | ruvA | 1333753..1334352 (+) | 600 | WP_011213600.1 | Holliday junction branch migration protein RuvA | - |
| CKV84_RS06170 (SAMEA4040028_01218) | - | 1334402..1334722 (+) | 321 | WP_027220717.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 341 a.a. Molecular weight: 39433.70 Da Isoelectric Point: 4.3732
>NTDB_id=1031640 CKV84_RS06145 WP_011213596.1 1329964..1330989(+) (rpoS) [Legionella pneumophila strain NCTC11985]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF
Nucleotide
Download Length: 1026 bp
>NTDB_id=1031640 CKV84_RS06145 WP_011213596.1 1329964..1330989(+) (rpoS) [Legionella pneumophila strain NCTC11985]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCTTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAATCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCAGAAA
TGGTGGATAAACCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCTTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCTTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAATCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCAGAAA
TGGTGGATAAACCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCTTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.509 |
81.232 |
0.548 |