Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CKV86_RS12455 Genome accession   NZ_LT906437
Coordinates   2085150..2086118 (-) Length   322 a.a.
NCBI ID   WP_003690389.1    Uniprot ID   B4RR95
Organism   Neisseria gonorrhoeae strain NCTC13799     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080150..2091118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV86_RS12430 - 2080692..2081999 (-) 1308 WP_012504094.1 YadA-like family protein -
  CKV86_RS12435 (SAMEA4076765_02153) - 2081985..2082638 (+) 654 WP_126317785.1 IS1595 family transposase -
  CKV86_RS12440 (SAMEA4076765_02154) - 2082673..2083431 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  CKV86_RS12445 (SAMEA4076765_02155) - 2083515..2084141 (-) 627 WP_003690385.1 FmdE family protein -
  CKV86_RS12450 (SAMEA4076765_02156) - 2084186..2085160 (-) 975 WP_003690387.1 iron chelate uptake ABC transporter family permease subunit -
  CKV86_RS12455 (SAMEA4076765_02157) ceuB 2085150..2086118 (-) 969 WP_003690389.1 ABC transporter permease Machinery gene
  CKV86_RS12460 - 2086137..2086328 (-) 192 WP_162098494.1 hypothetical protein -
  CKV86_RS12465 (SAMEA4076765_02158) - 2086346..2087311 (-) 966 WP_047923734.1 siderophore ABC transporter substrate-binding protein -
  CKV86_RS12470 (SAMEA4076765_02159) fetA 2087463..2089628 (-) 2166 WP_047917876.1 TonB-dependent siderophore receptor FetA/FrpB -
  CKV86_RS12475 (SAMEA4076765_02160) - 2090134..2090424 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34382.67 Da        Isoelectric Point: 10.5988

>NTDB_id=1031546 CKV86_RS12455 WP_003690389.1 2085150..2086118(-) (ceuB) [Neisseria gonorrhoeae strain NCTC13799]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGSSMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1031546 CKV86_RS12455 WP_003690389.1 2085150..2086118(-) (ceuB) [Neisseria gonorrhoeae strain NCTC13799]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCTCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGATGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RR95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391