Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB8K36_RS18360 Genome accession   NZ_CP165753
Coordinates   3728235..3728831 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain CRE187     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723235..3733831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8K36_RS18345 (AB8K36_18335) helD 3723443..3725497 (-) 2055 WP_004176653.1 DNA helicase IV -
  AB8K36_RS18350 (AB8K36_18340) - 3725622..3726068 (+) 447 WP_211701945.1 YccF domain-containing protein -
  AB8K36_RS18355 (AB8K36_18345) yccS 3726086..3728221 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AB8K36_RS18360 (AB8K36_18350) sxy/tfoX 3728235..3728831 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AB8K36_RS18365 (AB8K36_18355) sulA 3729180..3729689 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AB8K36_RS18370 (AB8K36_18360) ompA 3730041..3731105 (+) 1065 WP_064278948.1 porin OmpA -
  AB8K36_RS18375 (AB8K36_18365) matP 3731237..3731689 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB8K36_RS18380 (AB8K36_18370) - 3731875..3732522 (+) 648 Protein_3584 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1031537 AB8K36_RS18360 WP_004179217.1 3728235..3728831(-) (sxy/tfoX) [Klebsiella pneumoniae strain CRE187]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1031537 AB8K36_RS18360 WP_004179217.1 3728235..3728831(-) (sxy/tfoX) [Klebsiella pneumoniae strain CRE187]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment