Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQK13_RS14860 Genome accession   NZ_AP027960
Coordinates   3018194..3018823 (-) Length   209 a.a.
NCBI ID   WP_106464856.1    Uniprot ID   -
Organism   Escherichia coli strain VE-T2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013194..3023823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK13_RS14845 (VET2_28670) helD 3013436..3015490 (-) 2055 WP_000420533.1 DNA helicase IV -
  QQK13_RS14850 (VET2_28680) yccF 3015613..3016059 (+) 447 WP_001261231.1 YccF domain-containing protein -
  QQK13_RS14855 (VET2_28690) yccS 3016069..3018231 (+) 2163 WP_000875020.1 YccS family putative transporter -
  QQK13_RS14860 (VET2_28700) sxy/tfoX 3018194..3018823 (-) 630 WP_106464856.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQK13_RS14865 (VET2_28710) sulA 3019042..3019551 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQK13_RS14870 (VET2_28730) ompA 3019908..3020948 (+) 1041 WP_000750416.1 porin OmpA -
  QQK13_RS14875 (VET2_28740) matP 3021024..3021476 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQK13_RS14880 (VET2_28750) ycbZ 3021662..3023422 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24193.10 Da        Isoelectric Point: 9.0428

>NTDB_id=103153 QQK13_RS14860 WP_106464856.1 3018194..3018823(-) (sxy/tfoX) [Escherichia coli strain VE-T2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=103153 QQK13_RS14860 WP_106464856.1 3018194..3018823(-) (sxy/tfoX) [Escherichia coli strain VE-T2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment