Detailed information NTG0103151

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BD29_RS02470
• Genome accession: NZ_CP007190
• Coordinates: 475982..478555 (-)
• Length: 857 a.a.
• NCBI ID: WP_022552248.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain HF5-7-1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 470982..483555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BD29_RS02460 (BD29_02460)	maf	473475..474026 (+)	552	WP_002866403.1	septum formation inhibitor Maf	-
BD29_RS02465 (BD29_02465)	pbpA	474023..475954 (+)	1932	WP_002857099.1	penicillin-binding protein 1A	-
BD29_RS02470 (BD29_02470)	clpC	475982..478555 (-)	2574	WP_022552248.1	AAA family ATPase	Regulator
BD29_RS02475 (BD29_02475)	-	478667..478957 (-)	291	WP_002855280.1	metal-sensing transcriptional repressor	-
BD29_RS02480 (BD29_02480)	-	479075..480409 (+)	1335	WP_002856815.1	S41 family peptidase	-
BD29_RS02485 (BD29_02485)	purC	480411..481121 (+)	711	WP_002854922.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
BD29_RS02490 (BD29_02490)	purS	481130..481375 (+)	246	WP_002866405.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
BD29_RS02495 (BD29_02495)	purQ	481377..482049 (+)	673	Protein_474	phosphoribosylformylglycinamidine synthase I	-
BD29_RS02500 (BD29_02500)	-	482021..483217 (+)	1197	WP_002877649.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95471.56 Da
• Isoelectric Point: 5.3329

>NTDB_id=103151 BD29_RS02470 WP_022552248.1 475982..478555(-) (clpC) [Campylobacter jejuni strain HF5-7-1]
MANIQNFLTDNMLSNLESAASLAIHSKNNEVAPLHLLWALSVDSTSILNQILNKLNISKEALELEIKSRISKLATSSNVN
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLVSESQKSPTKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDVVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=103151 BD29_RS02470 WP_022552248.1 475982..478555(-) (clpC) [Campylobacter jejuni strain HF5-7-1]
ATGGCAAATATACAAAATTTTCTAACTGATAATATGCTTTCAAACCTTGAAAGCGCAGCATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGCACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAGTACAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCCAAAGAAGCCTTAGAACTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGTAAAC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTAATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTGTAAGTGAAAGTCAAAAAAGTCCTACTAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGCAAAATCGATAGCAAAACAAGCGATGAAACCTTAGAC
AGCTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAAGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGTTTAATGCAAATTTTAATACGCAAAACCAAAAATAACCCTATACTTTTAGGTGAACCAGGCGTAGGAAAAA
CAGCTATAGTGGAAGCTTTAGCACAAAGAATTATTAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTTATCGCT
CTTGACATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTTGAAGACAGATTAAAAGCTGTCGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGTATGG
ATGCGGCAAATATTTTAAAACCTGCTCTTGCAAGAGGTGAACTCCATACTATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGCGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACTATAAATGATAGCGCTTTAGTAGCTGCAG
CTAAACTTTCAAAGCGTTATATAGCGGATCGTTTTTTACCTGATAAGGCCATTGATTTAATCGATGAAGCTGCAGCTGAA
CTGAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGACGAGAAAAATCAAAAAAGACTTGATGAAATCGCAAAAGAACTAGCCAATTTAAAAGAAA
AACAAAATGCCTTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGCATAAGTGCTAAGAAAAAAGAAATTGAT
CTGCTTAAAAATGAAGCTTCTTTGGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTACTTAAAAATCAAG
TGGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGTTAACTTCTGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGACAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGCAACAAAGCAGGACTTAATGCGGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCAGCTAAAGCTTTGGCAAAATTTTTATTTGACGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGCGCACCTCCAGGGTACATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCTGTGCGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGCAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATTGCCTCAAGCGCTATTATGAATTTAAGCGGAAAAGAACAAGAAGATGTGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGCTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TTAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGGATAAAAGCGAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGATCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATGCAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• AAA lid domain (AAA_lid_9) (342-444)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.291	100	0.433
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.217	100	0.419