Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3K28_RS15430 Genome accession   NZ_CP165737
Coordinates   3139400..3140029 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PEC1013     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134400..3145029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3K28_RS15415 helD 3134642..3136696 (-) 2055 WP_020232990.1 DNA helicase IV -
  AB3K28_RS15420 yccF 3136819..3137265 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AB3K28_RS15425 yccS 3137275..3139437 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AB3K28_RS15430 sxy/tfoX 3139400..3140029 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB3K28_RS15435 sulA 3140248..3140757 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB3K28_RS15440 ompA 3141114..3142166 (+) 1053 WP_000750418.1 porin OmpA -
  AB3K28_RS15445 matP 3142241..3142693 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB3K28_RS15450 ycbZ 3142879..3144639 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1031416 AB3K28_RS15430 WP_000839153.1 3139400..3140029(-) (sxy/tfoX) [Escherichia coli strain PEC1013]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1031416 AB3K28_RS15430 WP_000839153.1 3139400..3140029(-) (sxy/tfoX) [Escherichia coli strain PEC1013]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment