Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCBK1071_RS13410 Genome accession   NZ_LT897797
Coordinates   2880606..2881079 (+) Length   157 a.a.
NCBI ID   WP_101411272.1    Uniprot ID   -
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2875606..2886079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS13395 (VCBK1071_02632) - 2876304..2877344 (-) 1041 WP_101411269.1 IS481-like element ISVvu4 family transposase -
  VCBK1071_RS13400 (VCBK1071_02633) - 2877527..2879140 (-) 1614 WP_101411270.1 TIGR02391 family protein -
  VCBK1071_RS13405 (VCBK1071_02634) - 2879236..2880414 (-) 1179 WP_005496805.1 DNA cytosine methyltransferase -
  VCBK1071_RS13410 (VCBK1071_02635) radC 2880606..2881079 (+) 474 WP_101411272.1 RadC family protein Machinery gene
  VCBK1071_RS13415 (VCBK1071_02636) - 2881076..2881513 (+) 438 WP_172440123.1 DUF2787 domain-containing protein -
  VCBK1071_RS13420 (VCBK1071_02637) - 2881564..2882007 (+) 444 WP_101411276.1 DUF2787 domain-containing protein -
  VCBK1071_RS13425 - 2882011..2882187 (+) 177 WP_101411278.1 hypothetical protein -
  VCBK1071_RS13430 (VCBK1071_02638) - 2882326..2883060 (+) 735 WP_101411280.1 WYL domain-containing protein -
  VCBK1071_RS13435 (VCBK1071_02639) - 2883091..2883459 (+) 369 WP_101411282.1 hypothetical protein -
  VCBK1071_RS13440 (VCBK1071_02640) - 2883507..2883734 (+) 228 WP_017050832.1 hypothetical protein -
  VCBK1071_RS13450 (VCBK1071_02642) - 2884170..2885270 (-) 1101 WP_101411284.1 hypothetical protein -
  VCBK1071_RS13455 (VCBK1071_02643) - 2885395..2885832 (-) 438 WP_000122379.1 ribonuclease HI -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17728.94 Da        Isoelectric Point: 5.6192

>NTDB_id=1031393 VCBK1071_RS13410 WP_101411272.1 2880606..2881079(+) (radC) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MNPKTSDYQKQQRYQENEILEHAAEILANRYVRGDALANPDATKEYVRCKLGSYEREVFALLLLDNQNRLIEFKELFHGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDSCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1031393 VCBK1071_RS13410 WP_101411272.1 2880606..2881079(+) (radC) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGAATCCCAAAACTTCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAAATACT
GGCTAACCGCTACGTGCGTGGCGATGCCCTAGCCAATCCTGACGCCACCAAAGAGTATGTGCGCTGTAAGCTCGGCAGCT
ATGAGCGTGAAGTGTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCATGGAACG
GTGGATGCAGCCAGCGTCTACCCGCGAGAAGTGGTGAAAGCCGTGTTAGAAGTCAATGCAGCAGCGGTGATATTTGCCCA
TAACCATCCATCTGGAGACTCTACGCCGTCTCAAGCCGATAGACGCATAACTGAGAGACTCAAAGACGCGCTCGCGCTGG
TGGATGTTCGCGTACTTGACCATATCGTGACAGGCGATAGCTGCACCTCGTTTGCTGAAAGGGGATGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.715

87.261

0.408