Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCBK1071_RS10020 Genome accession   NZ_LT897797
Coordinates   2164333..2164809 (+) Length   158 a.a.
NCBI ID   WP_000148678.1    Uniprot ID   A0A2J9V1L1
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2159333..2169809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS09980 (VCBK1071_01954) - 2159681..2159980 (+) 300 WP_001117493.1 type VI secretion system PAAR protein -
  VCBK1071_RS09985 (VCBK1071_01955) - 2160188..2160976 (+) 789 WP_101411355.1 glycosyl hydrolase -
  VCBK1071_RS09990 (VCBK1071_01956) - 2160987..2161286 (+) 300 WP_032475266.1 type VI secretion system PAAR protein -
  VCBK1071_RS09995 (VCBK1071_01957) - 2161495..2162283 (+) 789 WP_032475273.1 hypothetical protein -
  VCBK1071_RS10000 (VCBK1071_01958) - 2162294..2162485 (+) 192 WP_032475265.1 PAAR domain-containing protein -
  VCBK1071_RS10005 (VCBK1071_01959) - 2162613..2163242 (+) 630 WP_101410927.1 DUF2628 domain-containing protein -
  VCBK1071_RS10010 (VCBK1071_01960) - 2163315..2163854 (+) 540 WP_032475263.1 hypothetical protein -
  VCBK1071_RS10015 (VCBK1071_01961) - 2164013..2164189 (-) 177 WP_172440103.1 AlpA family transcriptional regulator -
  VCBK1071_RS10020 (VCBK1071_01962) radC 2164333..2164809 (+) 477 WP_000148678.1 RadC family protein Machinery gene
  VCBK1071_RS10025 (VCBK1071_01963) - 2164806..2165234 (+) 429 WP_000634666.1 DUF2787 family protein -
  VCBK1071_RS10030 (VCBK1071_01964) - 2165285..2165731 (+) 447 WP_000065403.1 DUF2787 domain-containing protein -
  VCBK1071_RS10035 (VCBK1071_01965) - 2165834..2166820 (+) 987 WP_002044218.1 GTPase family protein -
  VCBK1071_RS10040 (VCBK1071_01966) - 2166855..2167496 (-) 642 WP_032480501.1 inovirus Gp2 family protein -
  VCBK1071_RS10045 (VCBK1071_01967) - 2167889..2168896 (+) 1008 WP_101410931.1 CopG family transcriptional regulator -
  VCBK1071_RS10050 (VCBK1071_01968) - 2168989..2169189 (-) 201 WP_001293720.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18292.74 Da        Isoelectric Point: 6.9191

>NTDB_id=1031367 VCBK1071_RS10020 WP_000148678.1 2164333..2164809(+) (radC) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1031367 VCBK1071_RS10020 WP_000148678.1 2164333..2164809(+) (radC) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGACTCATTTCCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTAGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTGCGCTGTAAACTTGCTG
GATATGAGCACGAAATGTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGC
ACGGTCGACGCCGCCAGTGTCTACCCAAGAGAGGTACTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAATCACCCCTCTGGCGATCCGGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTAGATATTCGTGTGCTGGACCATGTGGTCGTTGGCAAAAGCAGCGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9V1L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

88.608

0.437