Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VCBK1071_RS05435 Genome accession   NZ_LT897797
Coordinates   1138644..1139258 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133644..1144258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS05410 (VCBK1071_01056) - 1133831..1135045 (-) 1215 WP_001903180.1 EAL and HDOD domain-containing protein -
  VCBK1071_RS05415 (VCBK1071_01057) lpxH 1135141..1135881 (-) 741 WP_101410411.1 UDP-2,3-diacylglucosamine diphosphatase -
  VCBK1071_RS05420 (VCBK1071_01058) - 1135922..1136416 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  VCBK1071_RS05425 (VCBK1071_01059) cysS 1136562..1137941 (+) 1380 WP_000913178.1 cysteine--tRNA ligase -
  VCBK1071_RS05430 (VCBK1071_01060) ruvC 1138029..1138550 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  VCBK1071_RS05435 (VCBK1071_01061) ruvA 1138644..1139258 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  VCBK1071_RS05440 (VCBK1071_01062) ruvB 1139314..1140318 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VCBK1071_RS05445 (VCBK1071_01064) cydA 1140777..1142363 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  VCBK1071_RS05450 (VCBK1071_01065) cydB 1142381..1143517 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  VCBK1071_RS05455 (VCBK1071_01066) cydX 1143530..1143637 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VCBK1071_RS05460 ybgE 1143630..1143947 (+) 318 WP_001286620.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=1031346 VCBK1071_RS05435 WP_000580350.1 1138644..1139258(+) (ruvA) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1031346 VCBK1071_RS05435 WP_000580350.1 1138644..1139258(+) (ruvA) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCCATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTCGTGC
GGGAAGATGCACAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCTAAAATGGGGCTAGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGCGTTGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTTGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACTCCTGCAACCGATGCTGCACCTGTCGATTCTACGCCCGTGATTGCCCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAACCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTAGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363