Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PANN_RS24530 Genome accession   NZ_LT883143
Coordinates   5142317..5142811 (-) Length   164 a.a.
NCBI ID   WP_003292123.1    Uniprot ID   A0ABY1WHY7
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5137317..5147811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS24505 (PANN_49190) - 5137453..5138976 (-) 1524 WP_033959619.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  PANN_RS24510 (PANN_49200) - 5138992..5139345 (-) 354 WP_003292115.1 hypothetical protein -
  PANN_RS24515 (PANN_49210) - 5139342..5140748 (-) 1407 WP_013721901.1 integrating conjugative element protein -
  PANN_RS24520 (PANN_49220) - 5140759..5141703 (-) 945 WP_033959618.1 TIGR03756 family integrating conjugative element protein -
  PANN_RS24525 (PANN_49230) - 5141700..5142149 (-) 450 WP_023121126.1 TIGR03757 family integrating conjugative element protein -
  PANN_RS24530 (PANN_49240) radC 5142317..5142811 (-) 495 WP_003292123.1 RadC family protein Machinery gene
  PANN_RS24535 (PANN_49250) - 5143007..5143750 (-) 744 WP_023121127.1 thioredoxin domain-containing protein -
  PANN_RS24540 (PANN_49260) - 5143764..5146652 (-) 2889 WP_033959614.1 conjugative transfer ATPase -
  PANN_RS24545 (PANN_49270) - 5146652..5147086 (-) 435 WP_033959611.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=1031269 PANN_RS24530 WP_003292123.1 5142317..5142811(-) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1031269 PANN_RS24530 WP_003292123.1 5142317..5142811(-) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGTCTCTCGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCGGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTCGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCACCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTGCTGGACCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421

Multiple sequence alignment