Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PANN_RS24290 Genome accession   NZ_LT883143
Coordinates   5081743..5082237 (+) Length   164 a.a.
NCBI ID   WP_033981957.1    Uniprot ID   A0ABS8CCJ1
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5076743..5087237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS24275 (PANN_48720) - 5077411..5077860 (+) 450 WP_050159774.1 TIGR03751 family conjugal transfer lipoprotein -
  PANN_RS24280 (PANN_48730) - 5077860..5080769 (+) 2910 WP_033981955.1 conjugative transfer ATPase -
  PANN_RS24285 (PANN_48740) - 5080785..5081549 (+) 765 WP_033981956.1 DsbA family protein -
  PANN_RS24290 (PANN_48750) radC 5081743..5082237 (+) 495 WP_033981957.1 JAB domain-containing protein Machinery gene
  PANN_RS24295 (PANN_48760) - 5082402..5082848 (+) 447 WP_033981958.1 TIGR03757 family integrating conjugative element protein -
  PANN_RS24300 (PANN_48770) - 5082845..5083792 (+) 948 WP_033981959.1 TIGR03756 family integrating conjugative element protein -
  PANN_RS24305 (PANN_48780) - 5083803..5085221 (+) 1419 WP_033981960.1 integrating conjugative element protein -
  PANN_RS24310 (PANN_48790) - 5085218..5085589 (+) 372 WP_033981961.1 hypothetical protein -
  PANN_RS24315 (PANN_48800) - 5085605..5087125 (+) 1521 WP_033981962.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18156.95 Da        Isoelectric Point: 5.9030

>NTDB_id=1031268 PANN_RS24290 WP_033981957.1 5081743..5082237(+) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MSVVINDSCLESLSDIAAQHEDWIVQQAIVLLERRVFKAGPRLERPAAVRDYLRLKLVAEPNEIFVVVFMNSMHDVLAVE
PMFHGTINATSVYPRVVLQRALQLNAAAVIFAHQHPSGSTEPSNADRVLTEQLKTALALIDVRVLDHFVIGQGTPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1031268 PANN_RS24290 WP_033981957.1 5081743..5082237(+) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGTCTGTCGTCATCAATGACTCCTGCCTGGAGTCACTTTCCGATATTGCCGCTCAGCACGAAGACTGGATCGTTCAGCA
AGCCATCGTGCTGCTGGAGCGACGGGTTTTCAAAGCCGGGCCACGTCTTGAACGGCCCGCTGCGGTCAGGGACTACCTTC
GCTTGAAGCTGGTCGCCGAGCCCAACGAGATCTTCGTCGTTGTATTCATGAACAGCATGCACGACGTGCTGGCCGTGGAG
CCGATGTTCCATGGAACGATCAATGCGACCTCGGTTTATCCACGGGTCGTGCTGCAGCGCGCTTTGCAACTGAACGCCGC
TGCGGTCATCTTCGCCCATCAGCACCCCTCGGGTTCCACCGAGCCATCCAATGCGGATCGCGTGCTGACCGAGCAGTTGA
AGACCGCCTTGGCGCTTATCGACGTGCGCGTACTCGACCATTTCGTGATTGGTCAGGGCACGCCGTACTCGTTCGCCGAG
TCGGGTCTTTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.096

89.024

0.366