Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PANN_RS23280 Genome accession   NZ_LT883143
Coordinates   4885852..4886361 (+) Length   169 a.a.
NCBI ID   WP_023121031.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4880852..4891361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS23255 - 4880894..4881739 (-) 846 WP_049233430.1 DUF2971 domain-containing protein -
  PANN_RS23260 (PANN_46720) - 4881900..4882895 (-) 996 WP_023087750.1 tyrosine-type recombinase/integrase -
  PANN_RS33390 - 4882895..4883044 (-) 150 Protein_4512 hypothetical protein -
  PANN_RS23270 (PANN_46740) - 4883223..4884422 (+) 1200 WP_023121029.1 tyrosine-type recombinase/integrase -
  PANN_RS23275 (PANN_46750) - 4884419..4885483 (+) 1065 WP_023121030.1 PDDEXK nuclease domain-containing protein -
  PANN_RS23280 (PANN_46760) radC 4885852..4886361 (+) 510 WP_023121031.1 RadC family protein Machinery gene
  PANN_RS23285 (PANN_46770) - 4886638..4887036 (+) 399 WP_023121032.1 hypothetical protein -
  PANN_RS23290 (PANN_46780) - 4887191..4887448 (+) 258 WP_023121033.1 metal-sensing transcriptional repressor -
  PANN_RS23295 (PANN_46790) - 4887458..4888768 (+) 1311 WP_023121034.1 MFS transporter -
  PANN_RS23300 (PANN_46800) - 4889302..4889652 (+) 351 WP_023121035.1 DUF2958 domain-containing protein -
  PANN_RS32995 (PANN_46801) - 4889741..4890427 (-) 687 WP_023121036.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18588.23 Da        Isoelectric Point: 7.5711

>NTDB_id=1031265 PANN_RS23280 WP_023121031.1 4885852..4886361(+) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MSQLSFSSFNASLMVRDAQGRYLLATADQILEAARQAIEHKMQRGASFSSPAAVKEYLRAKLAGFEHEVFAVLFLDTQHR
LIEYAEMFRGTIDSAEVHPREVVKAALRRNAAAVIISHNHPSGNPEPSSADKMLTQRLKEALALVDVRTLDHIIVAGGTT
TSFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1031265 PANN_RS23280 WP_023121031.1 4885852..4886361(+) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGTCGCAACTGTCCTTTTCCTCGTTCAATGCCTCGCTGATGGTGCGCGACGCACAGGGCCGCTACCTGCTGGCGACGGC
CGACCAGATTCTGGAGGCCGCGCGCCAGGCCATCGAGCACAAGATGCAACGCGGTGCGTCGTTCAGTTCGCCGGCGGCGG
TCAAGGAATACCTGCGCGCCAAGCTGGCCGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCCTCGATACACAGCATCGC
CTGATCGAGTATGCCGAGATGTTCCGCGGCACCATCGACTCAGCCGAAGTGCATCCGCGCGAAGTGGTCAAGGCGGCCCT
GCGGCGCAACGCGGCGGCAGTCATCATTTCGCACAATCATCCGAGCGGGAATCCCGAGCCGAGCAGTGCCGACAAGATGC
TGACCCAGCGGCTCAAGGAGGCGCTGGCGCTGGTGGATGTCCGCACGCTGGATCACATCATCGTGGCAGGTGGCACCACC
ACGTCCTTTGCCGAACGCGGCCTGATCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.286

82.84

0.367