Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PANN_RS19460 Genome accession   NZ_LT883143
Coordinates   4110919..4111515 (-) Length   198 a.a.
NCBI ID   WP_023087605.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4105919..4116515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS33625 - 4106265..4106462 (-) 198 Protein_3770 TetR family transcriptional regulator -
  PANN_RS19440 (PANN_39000) - 4106555..4108138 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  PANN_RS19445 (PANN_39010) - 4108135..4109022 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  PANN_RS19450 (PANN_39020) - 4109096..4109635 (+) 540 WP_019682285.1 CbrC family protein -
  PANN_RS19455 (PANN_39030) - 4109648..4110796 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  PANN_RS19460 (PANN_39040) recR 4110919..4111515 (-) 597 WP_023087605.1 recombination mediator RecR Machinery gene
  PANN_RS19465 (PANN_39050) - 4111594..4111920 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PANN_RS19470 (PANN_39060) dnaX 4111966..4114056 (-) 2091 WP_058149649.1 DNA polymerase III subunit gamma/tau -
  PANN_RS19475 - 4114093..4114959 (+) 867 WP_003120462.1 substrate-binding periplasmic protein -
  PANN_RS19485 (PANN_39080) - 4115213..4115590 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21185.48 Da        Isoelectric Point: 6.0063

>NTDB_id=1031258 PANN_RS19460 WP_023087605.1 4110919..4111515(-) (recR) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALIAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1031258 PANN_RS19460 WP_023087605.1 4110919..4111515(-) (recR) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGATCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48