Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PANN_RS13845 Genome accession   NZ_LT883143
Coordinates   2864231..2864737 (-) Length   168 a.a.
NCBI ID   WP_013721784.1    Uniprot ID   A0ABW2RES8
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2859231..2869737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS13825 (PANN_27510) - 2859417..2861468 (-) 2052 WP_023087443.1 ParB/RepB/Spo0J family partition protein -
  PANN_RS13830 (PANN_27520) - 2861547..2862371 (-) 825 WP_023087444.1 DUF932 domain-containing protein -
  PANN_RS13835 (PANN_27530) - 2862900..2863568 (+) 669 WP_013721782.1 DUF6988 family protein -
  PANN_RS13840 (PANN_27540) - 2863599..2863949 (-) 351 WP_013721783.1 DUF2958 domain-containing protein -
  PANN_RS13845 (PANN_27550) radC 2864231..2864737 (-) 507 WP_013721784.1 RadC family protein Machinery gene
  PANN_RS13850 (PANN_27551) - 2865150..2866292 (+) 1143 WP_013721785.1 toll/interleukin-1 receptor domain-containing protein -
  PANN_RS13855 - 2866296..2866883 (+) 588 WP_013721786.1 hypothetical protein -
  PANN_RS13860 (PANN_27561) - 2866925..2867410 (+) 486 WP_011805825.1 TIR domain-containing protein -
  PANN_RS13865 (PANN_27570) - 2867427..2868089 (-) 663 WP_011805824.1 uracil-DNA glycosylase -
  PANN_RS13870 (PANN_27580) - 2868086..2869222 (-) 1137 WP_011805823.1 nucleoside triphosphate pyrophosphohydrolase family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18707.40 Da        Isoelectric Point: 7.0761

>NTDB_id=1031247 PANN_RS13845 WP_013721784.1 2864231..2864737(-) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MSQLTLTLDTPLMVRDGRGRYRLADADQILEAARQVIEQKMQRGEAFTSPEAVKDYLRAKLAGFEHEVFAVLFLDTRHRL
IDYVEMFRGTIDAAEVHPREVVKQALRLNAAAVIVSHNHPSGNSEPSAADKAMTSQLRQALALVDIRTLDHVIVAGTRTT
SFAERGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1031247 PANN_RS13845 WP_013721784.1 2864231..2864737(-) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGTCGCAACTGACCCTCACTCTCGACACCCCGCTGATGGTGCGCGATGGCCGTGGGCGCTATCGGCTGGCGGACGCCGA
CCAGATTCTGGAAGCCGCGCGCCAGGTCATCGAACAGAAGATGCAGCGCGGCGAGGCGTTCACTTCGCCGGAGGCGGTGA
AGGACTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCACGAAGTCTTCGCGGTGTTGTTCCTCGACACGCGCCATCGGCTG
ATCGACTACGTGGAGATGTTCCGCGGCACGATCGACGCCGCCGAGGTGCATCCGCGCGAGGTGGTGAAGCAGGCGCTGCG
GCTCAATGCGGCGGCGGTCATCGTTTCGCACAACCATCCGAGCGGAAACTCCGAGCCGAGCGCGGCCGACAAGGCGATGA
CCTCGCAGCTTCGGCAGGCGCTGGCGCTGGTGGACATTCGCACGCTGGATCACGTCATCGTTGCGGGGACTCGCACCACG
TCATTCGCCGAACGCGGCCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.079

90.476

0.399

Multiple sequence alignment