Detailed information NTG1031225

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PANN_RS07295
• Genome accession: NZ_LT883143
• Coordinates: 1548180..1549184 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1543180..1554184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PANN_RS07265 (PANN_14570)	fghA	1543272..1544123 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PANN_RS07270 (PANN_14580)	ispF	1544194..1544667 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PANN_RS07275 (PANN_14590)	truD	1544664..1545731 (+)	1068	WP_023087103.1	tRNA pseudouridine(13) synthase TruD	-
PANN_RS07280 (PANN_14600)	surE	1545719..1546468 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PANN_RS07285 (PANN_14610)	-	1546501..1547136 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PANN_RS07290 (PANN_14620)	-	1547182..1548075 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PANN_RS07295 (PANN_14630)	rpoS	1548180..1549184 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PANN_RS07300 (PANN_14640)	fdxA	1549611..1549934 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PANN_RS07305 (PANN_14650)	mutS	1550001..1552568 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PANN_RS07315 (PANN_14670)	-	1552694..1553701 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1031225 PANN_RS07295 WP_003113871.1 1548180..1549184(+) (rpoS) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1031225 PANN_RS07295 WP_003113871.1 1548180..1549184(+) (rpoS) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653