Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PANN_RS06315 Genome accession   NZ_LT883143
Coordinates   1330200..1330709 (+) Length   169 a.a.
NCBI ID   WP_009616213.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1325200..1335709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANN_RS06300 (PANN_12651) - 1328081..1328890 (+) 810 WP_033871936.1 hypothetical protein -
  PANN_RS06305 (PANN_12652) - 1328988..1329584 (-) 597 WP_023087044.1 hypothetical protein -
  PANN_RS06315 (PANN_12660) radC 1330200..1330709 (+) 510 WP_009616213.1 RadC family protein Machinery gene
  PANN_RS06320 (PANN_12670) - 1330762..1331571 (-) 810 WP_023087045.1 hypothetical protein -
  PANN_RS06330 (PANN_12680) - 1332165..1332995 (+) 831 WP_023087046.1 DUF932 domain-containing protein -
  PANN_RS06335 (PANN_12690) - 1333075..1335108 (+) 2034 WP_023087047.1 ParB/RepB/Spo0J family partition protein -
  PANN_RS06340 (PANN_12700) - 1335352..1335549 (-) 198 WP_023087048.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18757.41 Da        Isoelectric Point: 5.9951

>NTDB_id=1031224 PANN_RS06315 WP_009616213.1 1330200..1330709(+) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
MSQLSFSSFDAMLLVRDAQGRYLPASADQILNMARQVIDQKYQRGALFTSPELVKDYLRTKLAGFEHEVFAALFLDSQHR
LLEYVELFRGTIDAAAVYPREVVKEALRVNAAAVIFSHNHPSGNPEPSQADKVLTQRLKEALALVDVRTLDHIIVGGEAT
ASFAEQGLL

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1031224 PANN_RS06315 WP_009616213.1 1330200..1330709(+) (radC) [Pseudomonas aeruginosa C-NN2 isolate early isolate NN2 (clone C)]
ATGTCGCAACTTTCCTTTTCCTCGTTCGATGCCATGCTGCTGGTGCGTGATGCACAGGGGCGCTACCTGCCTGCGTCTGC
AGATCAGATCCTGAATATGGCGCGTCAGGTGATCGACCAGAAATACCAGCGTGGAGCGTTGTTCACGTCGCCGGAGCTGG
TCAAGGACTACCTGCGCACCAAACTGGCTGGTTTTGAGCACGAGGTGTTTGCGGCGCTATTCCTCGACAGCCAGCATCGG
CTGCTTGAGTATGTGGAGTTGTTTCGCGGCACCATCGATGCGGCGGCGGTGTATCCACGGGAAGTAGTGAAGGAGGCACT
GCGCGTCAACGCAGCGGCGGTGATTTTCTCGCACAACCATCCGAGCGGAAATCCAGAGCCCAGCCAGGCAGATAAGGTGC
TGACCCAGCGCCTCAAGGAGGCCCTGGCGCTGGTGGATGTGCGCACGCTGGATCACATCATCGTGGGTGGCGAGGCGACA
GCATCATTTGCGGAGCAGGGGCTGCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.571

82.84

0.402

Multiple sequence alignment