NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	EC1094V2_RS26440	Genome accession	NZ_LT883142
Coordinates	4830100..4830768 (+)	Length	222 a.a.
NCBI ID	WP_001298959.1	Uniprot ID	Q31UY8
Organism	Escherichia coli isolate 6666666.257727.embl
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4825100..4835768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EC1094V2_RS26405 (EC1094V2_4654)	yicC	4825119..4825982 (-)	864	WP_000621340.1	YicC/YloC family endoribonuclease	-
EC1094V2_RS26415 (EC1094V2_4655)	rph	4826109..4826825 (+)	717	WP_001247097.1	ribonuclease PH	-
EC1094V2_RS26420 (EC1094V2_4656)	pyrE	4826891..4827532 (+)	642	WP_000806177.1	orotate phosphoribosyltransferase	-
EC1094V2_RS26425 (EC1094V2_4657)	slmA	4827569..4828165 (-)	597	WP_000818601.1	nucleoid occlusion factor SlmA	-
EC1094V2_RS26430 (EC1094V2_4658)	dut	4828272..4828730 (-)	459	WP_000976070.1	dUTP diphosphatase	-
EC1094V2_RS26435 (EC1094V2_4659)	coaBC	4828708..4829928 (-)	1221	WP_000050139.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
EC1094V2_RS26440 (EC1094V2_4660)	radC	4830100..4830768 (+)	669	WP_001298959.1	DNA repair protein RadC	Machinery gene
EC1094V2_RS26445 (EC1094V2_4661)	rpmB	4830985..4831221 (+)	237	WP_000091955.1	50S ribosomal protein L28	-
EC1094V2_RS26450 (EC1094V2_4662)	rpmG	4831242..4831409 (+)	168	WP_001051798.1	50S ribosomal protein L33	-
EC1094V2_RS26455 (EC1094V2_4663)	mutM	4831507..4832316 (+)	810	WP_001114533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
EC1094V2_RS26460 (EC1094V2_4664)	coaD	4832355..4832834 (-)	480	WP_001171866.1	pantetheine-phosphate adenylyltransferase	-
EC1094V2_RS26465 (EC1094V2_4665)	waaA	4832842..4834119 (-)	1278	WP_000891574.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
EC1094V2_RS26470 (EC1094V2_4666)	rfaQ	4834532..4835590 (+)	1059	WP_000360409.1	lipopolysaccharide core heptosyltransferase RfaQ	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25274.35 Da Isoelectric Point: 7.9748

                                >NTDB_id=1031205 EC1094V2_RS26440 WP_001298959.1 4830100..4830768(+) (radC) [Escherichia coli isolate 6666666.257727.embl]

MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL

KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI

KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=1031205 EC1094V2_RS26440 WP_001298959.1 4830100..4830768(+) (radC) [Escherichia coli isolate 6666666.257727.embl]

GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT

GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT

CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA

AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC

GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG

TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA

AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT

TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG

TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	49.55	100	0.496

Detailed information NTG1031205