Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EC1094V2_RS19575 Genome accession   NZ_LT883142
Coordinates   3472603..3473208 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 6666666.257727.embl     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3467603..3478208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1094V2_RS19550 (EC1094V2_3372) aes 3467640..3468599 (+) 960 WP_000801813.1 acetyl esterase -
  EC1094V2_RS19555 (EC1094V2_3373) hemH 3468596..3469558 (-) 963 WP_096321587.1 ferrochelatase -
  EC1094V2_RS19560 (EC1094V2_3374) adk 3469794..3470438 (-) 645 WP_001220233.1 adenylate kinase -
  EC1094V2_RS19570 (EC1094V2_3375) htpG 3470619..3472493 (-) 1875 WP_032218182.1 molecular chaperone HtpG -
  EC1094V2_RS19575 (EC1094V2_3376) recR 3472603..3473208 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EC1094V2_RS19580 (EC1094V2_3377) ybaB 3473208..3473537 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EC1094V2_RS19585 (EC1094V2_3378) dnaX 3473590..3475521 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  EC1094V2_RS19590 (EC1094V2_3379) apt 3475650..3476201 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EC1094V2_RS19600 (EC1094V2_3380) ybaN 3476354..3476731 (-) 378 WP_001188905.1 DUF454 family protein -
  EC1094V2_RS19605 (EC1094V2_3381) priC 3476801..3477328 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  EC1094V2_RS19610 (EC1094V2_3382) rsmS 3477342..3477503 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EC1094V2_RS27900 - 3477556..3477654 (-) 99 Protein_3316 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1031176 EC1094V2_RS19575 WP_001195025.1 3472603..3473208(-) (recR) [Escherichia coli isolate 6666666.257727.embl]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1031176 EC1094V2_RS19575 WP_001195025.1 3472603..3473208(-) (recR) [Escherichia coli isolate 6666666.257727.embl]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443