Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QTG72_RS10515 Genome accession   NZ_CP165638
Coordinates   2080856..2081572 (+) Length   238 a.a.
NCBI ID   WP_153165599.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2075856..2086572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTG72_RS10485 (QTG72_10480) - 2076072..2076698 (+) 627 WP_000522375.1 nitroreductase family protein -
  QTG72_RS10490 (QTG72_10485) - 2077059..2077844 (+) 786 WP_000867944.1 carbon-nitrogen family hydrolase -
  QTG72_RS10495 hld 2078445..2078525 (-) 81 WP_000046022.1 delta-hemolysin -
  QTG72_RS10500 (QTG72_10495) agrB 2078814..2079383 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  QTG72_RS10505 (QTG72_10500) agrD 2079380..2079520 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  QTG72_RS10510 (QTG72_10505) agrC 2079545..2080837 (+) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  QTG72_RS10515 (QTG72_10510) agrA 2080856..2081572 (+) 717 WP_153165599.1 quorum-sensing response regulator AgrA Regulator
  QTG72_RS10520 (QTG72_10515) - 2081644..2081751 (+) 108 WP_031785433.1 hypothetical protein -
  QTG72_RS10525 (QTG72_10520) - 2081941..2082900 (-) 960 WP_001253295.1 carbohydrate kinase -
  QTG72_RS10530 (QTG72_10525) - 2082897..2084381 (-) 1485 WP_000141419.1 sucrose-6-phosphate hydrolase -
  QTG72_RS10535 (QTG72_10530) - 2084530..2085480 (-) 951 WP_000790314.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27886.85 Da        Isoelectric Point: 6.0358

>NTDB_id=1031157 QTG72_RS10515 WP_153165599.1 2080856..2081572(+) (agrA) [Staphylococcus aureus strain BSN01]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDHFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1031157 QTG72_RS10515 WP_153165599.1 2080856..2081572(+) (agrA) [Staphylococcus aureus strain BSN01]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAGGATGATCCAGCAGAATTAAGAACACGTATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCTGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAGTCACACAGACTCATTGCGCATTTAGACAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCACTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATTG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment