Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSZ51_RS21300 Genome accession   NZ_LT838200
Coordinates   4129089..4129565 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli isolate WI2 isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4124089..4134565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSZ51_RS27535 - 4126770..4126904 (-) 135 Protein_3941 transcriptional regulator -
  DSZ51_RS26920 - 4126874..4127023 (-) 150 Protein_3942 hypothetical protein -
  DSZ51_RS21275 (ECWI2_3975) - 4127129..4127305 (-) 177 WP_000839290.1 DUF957 domain-containing protein -
  DSZ51_RS21280 (ECWI2_3976) - 4127322..4127813 (-) 492 WP_000976842.1 DUF5983 family protein -
  DSZ51_RS21285 (ECWI2_3977) - 4127810..4128184 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  DSZ51_RS21290 (ECWI2_3978) - 4128274..4128642 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DSZ51_RS21295 (ECWI2_3980) - 4128805..4129026 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  DSZ51_RS21300 (ECWI2_3981) radC 4129089..4129565 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  DSZ51_RS21305 (ECWI2_3982) - 4129581..4130054 (-) 474 WP_000855059.1 antirestriction protein -
  DSZ51_RS21315 (ECWI2_3983) - 4130396..4130746 (-) 351 Protein_3950 DUF932 domain-containing protein -
  DSZ51_RS21320 (ECWI2_3984) - 4130784..4132323 (-) 1540 Protein_3951 IS66-like element ISEc22 family transposase -
  DSZ51_RS21325 (ECWI2_3985) tnpB 4132372..4132719 (-) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  DSZ51_RS21330 (ECWI2_3986) - 4132716..4133120 (-) 405 WP_000839179.1 transposase -
  DSZ51_RS21335 (ECWI2_3987) - 4133204..4133677 (-) 474 Protein_3954 DUF932 domain-containing protein -
  DSZ51_RS21345 (ECWI2_3988) - 4133795..4133990 (-) 196 Protein_3955 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=1031064 DSZ51_RS21300 WP_001186774.1 4129089..4129565(-) (radC) [Escherichia coli isolate WI2 isolate]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1031064 DSZ51_RS21300 WP_001186774.1 4129089..4129565(-) (radC) [Escherichia coli isolate WI2 isolate]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399