Detailed information NTG1031022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DSZ51_RS05375
• Genome accession: NZ_LT838200
• Coordinates: 1048689..1049681 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate WI2 isolate
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1043689..1054681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSZ51_RS05345 (ECWI2_1010)	ispD	1043750..1044460 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DSZ51_RS05350 (ECWI2_1011)	ispF	1044460..1044939 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DSZ51_RS05355 (ECWI2_1012)	truD	1044936..1045985 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
DSZ51_RS05360 (ECWI2_1013)	surE	1045966..1046727 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DSZ51_RS05365 (ECWI2_1014)	pcm	1046721..1047347 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DSZ51_RS05370 (ECWI2_1016)	nlpD	1047532..1048626 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
DSZ51_RS05375 (ECWI2_1017)	rpoS	1048689..1049681 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DSZ51_RS05380 (ECWI2_1018)	ygbN	1049775..1051139 (-)	1365	WP_000104459.1	GntP family transporter	-
DSZ51_RS05385 (ECWI2_1019)	ygbM	1051228..1052004 (-)	777	WP_001136916.1	HPr family phosphocarrier protein	-
DSZ51_RS05390 (ECWI2_1020)	ygbL	1052009..1052647 (-)	639	WP_001278994.1	aldolase	-
DSZ51_RS05395 (ECWI2_1021)	otnK	1052644..1053906 (-)	1263	WP_000590390.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1031022 DSZ51_RS05375 WP_000081550.1 1048689..1049681(+) (rpoS) [Escherichia coli isolate WI2 isolate]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1031022 DSZ51_RS05375 WP_000081550.1 1048689..1049681(+) (rpoS) [Escherichia coli isolate WI2 isolate]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715