Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB3G37_RS22075 Genome accession   NZ_CP165628
Coordinates   4797295..4798728 (+) Length   477 a.a.
NCBI ID   WP_369789096.1    Uniprot ID   A0AB39VR67
Organism   Rouxiella sp. WC2420     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4792295..4803728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G37_RS22045 (AB3G37_22060) - 4792773..4793750 (+) 978 WP_009634872.1 calcium/sodium antiporter -
  AB3G37_RS22050 (AB3G37_22065) kdsD 4793808..4794791 (+) 984 WP_009634873.1 arabinose-5-phosphate isomerase KdsD -
  AB3G37_RS22055 (AB3G37_22070) kdsC 4794836..4795402 (+) 567 WP_009634874.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AB3G37_RS22060 (AB3G37_22075) lptC 4795399..4795974 (+) 576 WP_009634875.1 LPS export ABC transporter periplasmic protein LptC -
  AB3G37_RS22065 (AB3G37_22080) lptA 4795952..4796518 (+) 567 WP_009634876.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  AB3G37_RS22070 (AB3G37_22085) lptB 4796522..4797247 (+) 726 WP_009634877.1 LPS export ABC transporter ATP-binding protein -
  AB3G37_RS22075 (AB3G37_22090) rpoN/rpoN1 4797295..4798728 (+) 1434 WP_369789096.1 RNA polymerase factor sigma-54 Machinery gene
  AB3G37_RS22080 (AB3G37_22095) hpf 4798752..4799039 (+) 288 WP_009634879.1 ribosome hibernation promoting factor -
  AB3G37_RS22085 (AB3G37_22100) ptsN 4799172..4799642 (+) 471 WP_009634880.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AB3G37_RS22090 (AB3G37_22105) rapZ 4799689..4800543 (+) 855 WP_009634881.1 RNase adapter RapZ -
  AB3G37_RS22095 (AB3G37_22110) npr 4800571..4800843 (+) 273 WP_009634882.1 PTS phosphocarrier protein NPr -
  AB3G37_RS22100 (AB3G37_22115) - 4800891..4802807 (-) 1917 WP_369789097.1 transcription antiterminator -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53536.53 Da        Isoelectric Point: 4.3429

>NTDB_id=1030983 AB3G37_RS22075 WP_369789096.1 4797295..4798728(+) (rpoN/rpoN1) [Rouxiella sp. WC2420]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQSDLHDEIDSVEAPENEALDTREALEQKDMPE
ELPLDATWDEIYTAGTPSGTGNDYSDDELPVYQGETTQTLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTISLDD
ILESIGDEEVSMDEVEAVLKRVQRFDPVGVAAKDLRDCLLIQLSQYVSETVFLTEARLIVSEHLDLLANHDFRALMRSTR
LKEDTLKGAMQLIQSLDPRPGQSINTGESEYVIPDVLVRKVGKIWTVELNSDSIPRLKINQQYAAMGNSVRNDSDGQFIR
SNLQEAKWLIKSLESRNDTLLKVTRCIVEQQQAFFDLGEEFMKPMVLADIASAVDMHESTISRVTTQKFLHSPRGIFELK
YFFSSHVSTDSGGEASSTAIRALVRKLIAAENPVKPLSDSKLATMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1030983 AB3G37_RS22075 WP_369789096.1 4797295..4798728(+) (rpoN/rpoN1) [Rouxiella sp. WC2420]
ATGAAGCAAGGTTTGCAACTCAGGCTCAGCCAACAATTGGCAATGACACCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
GCTGTCCACGCTTGAACTCCAGCAAGAGATACAATTGGCGCTGGAAAGCAATCCGCTGTTGGAACAATCCGATCTGCACG
ATGAAATAGACTCAGTAGAAGCCCCTGAAAACGAAGCGCTTGATACCCGCGAAGCCCTCGAGCAGAAAGACATGCCCGAG
GAACTTCCACTCGACGCCACCTGGGACGAAATCTACACCGCAGGTACGCCTTCGGGCACCGGCAATGATTACAGCGACGA
CGAGCTGCCGGTCTATCAGGGTGAAACTACTCAGACTCTGCAAGACTATCTGATGTGGCAGGTCGAACTGACACCCTTCA
CCGATACCGATCGCGCTATTGCAACCTCGATTGTTGACGCTGTCGATGACACCGGCTATCTCACCATATCTTTGGACGAC
ATCCTCGAAAGTATTGGCGATGAAGAAGTCAGCATGGATGAGGTAGAGGCGGTGCTCAAGCGCGTACAGCGTTTTGACCC
GGTCGGCGTAGCGGCGAAAGATTTGCGTGATTGCTTGCTGATTCAGCTATCGCAGTATGTTTCTGAAACCGTGTTTTTGA
CCGAAGCACGCCTGATTGTCAGCGAACATCTCGATCTGCTGGCAAATCACGATTTTCGTGCGCTGATGCGTTCAACACGT
TTAAAAGAAGATACACTTAAAGGTGCCATGCAGCTGATCCAGTCTCTGGACCCAAGGCCTGGACAGTCGATCAACACCGG
TGAATCCGAATATGTCATTCCAGACGTGCTGGTACGTAAAGTAGGCAAAATCTGGACGGTAGAATTAAACTCAGACAGCA
TTCCACGCCTGAAGATCAATCAACAGTACGCCGCGATGGGTAATTCAGTGCGTAACGATAGCGACGGACAATTTATTCGC
AGTAACCTGCAAGAAGCCAAGTGGTTGATTAAAAGTCTTGAAAGTCGCAATGACACATTATTGAAAGTGACACGTTGTAT
TGTTGAGCAGCAGCAGGCATTCTTTGATCTCGGTGAAGAGTTTATGAAACCCATGGTGCTGGCAGATATCGCCAGTGCCG
TGGATATGCACGAATCGACAATCTCCCGTGTGACTACGCAAAAGTTCCTGCACAGTCCGCGAGGCATTTTCGAATTAAAA
TATTTCTTCTCCAGTCATGTAAGTACGGATAGCGGTGGTGAAGCATCTTCCACGGCAATCCGCGCACTGGTGAGAAAATT
AATCGCGGCGGAAAACCCCGTCAAACCTCTGAGCGACAGCAAGTTAGCCACTATGCTATCGGATCAAGGCATTATGGTGG
CACGACGCACTGTAGCGAAATACCGAGAGTCTTTGTCAATCCCGCCATCAAACCAGCGTAAACAGTTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.747

100

0.482

Multiple sequence alignment