Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB2115_RS09345 Genome accession   NZ_CP165618
Coordinates   1886430..1888112 (-) Length   560 a.a.
NCBI ID   WP_002325462.1    Uniprot ID   A0A9X3XVK2
Organism   Enterococcus faecium strain ww_sludge_ent_V1_zoecandies_230529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881430..1893112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2115_RS09315 (AB2115_09315) ftsL 1882704..1883105 (-) 402 WP_002294542.1 cell division protein FtsL -
  AB2115_RS09320 (AB2115_09320) rsmH 1883110..1884069 (-) 960 WP_002325463.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  AB2115_RS09325 (AB2115_09325) mraZ 1884090..1884521 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  AB2115_RS09330 (AB2115_09330) - 1884691..1885059 (-) 369 WP_002286647.1 DUF3397 domain-containing protein -
  AB2115_RS09335 (AB2115_09335) - 1885230..1886186 (+) 957 WP_002286649.1 magnesium transporter CorA family protein -
  AB2115_RS09340 (AB2115_09340) - 1886259..1886375 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  AB2115_RS09345 (AB2115_09345) recN 1886430..1888112 (-) 1683 WP_002325462.1 DNA repair protein RecN Machinery gene
  AB2115_RS09350 (AB2115_09350) - 1888130..1888579 (-) 450 WP_002286653.1 arginine repressor -
  AB2115_RS09355 (AB2115_09355) - 1888686..1889504 (-) 819 WP_002286655.1 TlyA family RNA methyltransferase -
  AB2115_RS09360 (AB2115_09360) - 1889513..1890403 (-) 891 WP_002325461.1 polyprenyl synthetase family protein -
  AB2115_RS09365 (AB2115_09365) - 1890405..1890629 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  AB2115_RS09370 (AB2115_09370) xseA 1890634..1891971 (-) 1338 WP_002301369.1 exodeoxyribonuclease VII large subunit -
  AB2115_RS09375 (AB2115_09375) - 1891972..1892826 (-) 855 WP_002286660.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63377.82 Da        Isoelectric Point: 4.6049

>NTDB_id=1030940 AB2115_RS09345 WP_002325462.1 1886430..1888112(-) (recN) [Enterococcus faecium strain ww_sludge_ent_V1_zoecandies_230529]
MIQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCVLEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRRIGSYLVDIQGQNEHQELLQPESHLALLDRFGDVAFQQKKK
SYQQEYISYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVSELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLKLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=1030940 AB2115_RS09345 WP_002325462.1 1886430..1888112(-) (recN) [Enterococcus faecium strain ww_sludge_ent_V1_zoecandies_230529]
ATGATACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATTATTATCGATGCTTTAGGTCTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGAGCAGAAAAATGTGTGCTTGAAGGGTTGTTTGAACTACCAAAACAAGAAGGATTCTCTGAACTGATG
GTTGAATTAGGGATCGAAACAGATGAGGACAATCTGATTGTTCGACGGGATATGTCCTTAACTGGAAAAAATGTTTGTCG
AGTGAATGGTCATATCATCACATTAGCTAATCTGAGAAGAATCGGCAGTTATTTAGTAGATATCCAAGGACAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGTAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATATCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGTTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTTCAGAACTGCAAGGGATCGCCCATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTGCAAGATGCAATCGGCGATATGAGTCGTCAGATTGATTTATTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTGACGCAACGTTTAGAATTAATCCGACAGTTGAAACGTAAATACGGCGAATCC
ATTGAGTCAATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTGAAAAGTCTGTATATGGAAAACACTGAGTTTGAGGTACGTTTCTTA
AAAGAAGAAAATAGACAATTGAATCATGATGGATTTGACCAAATCGAATTTTACATTACGACCAATCCAGGAGAGCCACT
GAAGCCTTTGGTGAAAGTCGCTTCTGGTGGCGAACTGTCTCGGATGTTGCTTGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATTTTTGATGAAGTGGATACAGGTGTGAGCGGAAGAGTTGCACAAGCCATCGCAGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTGCCTCAAGTTGCTGCAGTCGCCGACTATCAATATTA
TATTGTGAAAGCAGTGATTGATGGACGTACGCAAACTTCTGTTTCAGAGTTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTGGCTGGAAGTGAGATTACAAAACTCACACTCGAACATGCAAAAGAACTATTGAAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.947

100

0.498

Multiple sequence alignment