Detailed information NTG1030901

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: BCM300_RS02495
• Genome accession: NZ_LT837687
• Coordinates: 498166..499371 (-)
• Length: 401 a.a.
• NCBI ID: WP_089086745.1
• Uniprot ID: -
• Organism: Helicobacter pylori isolate BCM-300
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 493166..504371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCM300_RS02470 (BCM300_00484)	-	493607..493834 (-)	228	Protein_467	replication regulatory RepB family protein	-
BCM300_RS02475 (BCM300_00485)	-	493804..494688 (-)	885	WP_089086741.1	ATPase, T2SS/T4P/T4SS family	-
BCM300_RS02480 (BCM300_00486)	-	494693..494968 (-)	276	WP_089086742.1	hypothetical protein	-
BCM300_RS02485 (BCM300_00487)	-	494985..495947 (-)	963	WP_089086743.1	hypothetical protein	-
BCM300_RS02490 (BCM300_00488)	-	495960..498182 (-)	2223	WP_089086744.1	RGS domain-containing GTPase-activating protein	-
BCM300_RS02495 (BCM300_00489)	comB10	498166..499371 (-)	1206	WP_089086745.1	DNA type IV secretion system protein ComB10	Machinery gene
BCM300_RS02500 (BCM300_00490)	-	499368..501023 (-)	1656	WP_000617227.1	TrbG/VirB9 family P-type conjugative transfer protein	-
BCM300_RS02505 (BCM300_00491)	-	501020..502156 (-)	1137	WP_089086746.1	VirB8/TrbF family protein	-
BCM300_RS08490	-	502149..502289 (-)	141	WP_000789928.1	hypothetical protein	-

Sequence

Protein

• Length: 401 a.a.
• Molecular weight: 44905.59 Da
• Isoelectric Point: 10.1066

>NTDB_id=1030901 BCM300_RS02495 WP_089086745.1 498166..499371(-) (comB10) [Helicobacter pylori isolate BCM-300]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKAKETPEVTTQEPTTQTSP
NPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPEMEYGVDSFT
NLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLN
IAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDY
LLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEINNEEE
I

Nucleotide

• Length: 1206 bp

>NTDB_id=1030901 BCM300_RS02495 WP_089086745.1 498166..499371(-) (comB10) [Helicobacter pylori isolate BCM-300]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGCCCC
AATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATACTAT
CACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAATTTT
TAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGATGGAATACGGCGTGGATAGTTTTACT
AATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTT
TTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTA
GAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAAC
ATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTA
TAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATG
GTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTAC
TTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCA
AAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAG
ATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCTAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAA
ATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (177-367)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.821	97.257	0.514