Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQK65_RS14095 Genome accession   NZ_AP027946
Coordinates   2899110..2899739 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain VE-F10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894110..2904739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK65_RS14080 (VEF10_26980) helD 2894352..2896406 (-) 2055 WP_001295354.1 DNA helicase IV -
  QQK65_RS14085 (VEF10_26990) yccF 2896529..2896975 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QQK65_RS14090 (VEF10_27000) yccS 2896985..2899147 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QQK65_RS14095 (VEF10_27010) sxy/tfoX 2899110..2899739 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQK65_RS14100 (VEF10_27020) sulA 2899958..2900467 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQK65_RS14105 (VEF10_27040) ompA 2900824..2901864 (+) 1041 WP_024201506.1 porin OmpA -
  QQK65_RS14110 (VEF10_27050) matP 2901940..2902392 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQK65_RS14115 (VEF10_27060) ycbZ 2902578..2904338 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=103085 QQK65_RS14095 WP_000839153.1 2899110..2899739(-) (sxy/tfoX) [Escherichia coli strain VE-F10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=103085 QQK65_RS14095 WP_000839153.1 2899110..2899739(-) (sxy/tfoX) [Escherichia coli strain VE-F10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment