Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB3D65_RS12115 Genome accession   NZ_CP165606
Coordinates   2424122..2424913 (-) Length   263 a.a.
NCBI ID   WP_059366616.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2419122..2429913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS12075 (AB3D65_12075) - 2419388..2419723 (-) 336 WP_007408558.1 SdpI family protein -
  AB3D65_RS12080 (AB3D65_12080) - 2419809..2420336 (-) 528 WP_151295619.1 SH3 domain-containing protein -
  AB3D65_RS12085 (AB3D65_12085) - 2420469..2420738 (-) 270 WP_003155492.1 YfhJ family protein -
  AB3D65_RS12090 (AB3D65_12090) - 2420862..2421014 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  AB3D65_RS12095 (AB3D65_12095) - 2421161..2422072 (+) 912 WP_059366613.1 trypsin-like serine peptidase -
  AB3D65_RS12100 (AB3D65_12100) - 2422035..2422424 (+) 390 WP_043020687.1 DUF2606 family protein -
  AB3D65_RS12105 (AB3D65_12105) - 2422464..2423657 (-) 1194 WP_076982912.1 MFS transporter -
  AB3D65_RS12110 (AB3D65_12110) - 2423801..2424115 (-) 315 WP_059366615.1 YfhH family protein -
  AB3D65_RS12115 (AB3D65_12115) recX 2424122..2424913 (-) 792 WP_059366616.1 recombination regulator RecX Regulator
  AB3D65_RS12120 (AB3D65_12120) - 2425005..2425904 (+) 900 WP_059366618.1 TIGR01777 family oxidoreductase -
  AB3D65_RS12125 (AB3D65_12125) - 2425962..2426072 (+) 111 WP_003155504.1 YfhE family protein -
  AB3D65_RS12130 (AB3D65_12130) - 2426143..2426334 (+) 192 WP_369546912.1 YfhD family protein -
  AB3D65_RS12135 (AB3D65_12135) - 2426373..2426957 (-) 585 WP_007408549.1 nitroreductase -
  AB3D65_RS12140 (AB3D65_12140) - 2427034..2427918 (-) 885 WP_369546913.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31032.23 Da        Isoelectric Point: 6.0921

>NTDB_id=1030817 AB3D65_RS12115 WP_059366616.1 2424122..2424913(-) (recX) [Bacillus velezensis strain BP1]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGRELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1030817 AB3D65_RS12115 WP_059366616.1 2424122..2424913(-) (recX) [Bacillus velezensis strain BP1]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAGAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAGGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATTGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment