Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB3D65_RS11060 Genome accession   NZ_CP165606
Coordinates   2231487..2232065 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BP1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2226487..2237065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS11025 (AB3D65_11025) - 2226909..2227226 (+) 318 WP_003155166.1 YbjQ family protein -
  AB3D65_RS11030 (AB3D65_11030) - 2227259..2227528 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  AB3D65_RS11035 (AB3D65_11035) - 2227724..2228434 (+) 711 WP_369546851.1 YrpD family protein -
  AB3D65_RS11040 (AB3D65_11040) eis 2228592..2229803 (+) 1212 WP_369546852.1 GNAT family N-acetyltransferase -
  AB3D65_RS11045 (AB3D65_11045) - 2229943..2230452 (-) 510 WP_369546853.1 MepB family protein -
  AB3D65_RS11050 (AB3D65_11050) - 2230575..2230946 (-) 372 WP_369546854.1 iron chaperone -
  AB3D65_RS11055 (AB3D65_11055) - 2230973..2231341 (-) 369 WP_012117235.1 iron chaperone -
  AB3D65_RS11060 (AB3D65_11060) comK 2231487..2232065 (-) 579 WP_003155179.1 competence protein ComK Regulator
  AB3D65_RS11065 (AB3D65_11065) - 2232381..2232614 (+) 234 WP_369546855.1 IDEAL domain-containing protein -
  AB3D65_RS11070 (AB3D65_11070) - 2232645..2233502 (-) 858 WP_369546856.1 SDR family oxidoreductase -
  AB3D65_RS11075 (AB3D65_11075) - 2233627..2235150 (+) 1524 WP_369546857.1 FAD-dependent oxidoreductase -
  AB3D65_RS20740 - 2235054..2235806 (+) 753 Protein_2134 protoglobin domain-containing protein -
  AB3D65_RS20745 - 2236050..2236565 (+) 516 WP_370529535.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1030812 AB3D65_RS11060 WP_003155179.1 2231487..2232065(-) (comK) [Bacillus velezensis strain BP1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1030812 AB3D65_RS11060 WP_003155179.1 2231487..2232065(-) (comK) [Bacillus velezensis strain BP1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment