Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB3D65_RS09290 Genome accession   NZ_CP165606
Coordinates   1900391..1900855 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain BP1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895391..1905855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS09265 (AB3D65_09265) - 1895898..1896445 (-) 548 Protein_1773 hypothetical protein -
  AB3D65_RS09270 (AB3D65_09270) fadH 1896559..1897323 (-) 765 WP_369546738.1 2,4-dienoyl-CoA reductase -
  AB3D65_RS09275 (AB3D65_09275) - 1897468..1898331 (+) 864 WP_151296594.1 metallophosphoesterase -
  AB3D65_RS09280 (AB3D65_09280) - 1898406..1898900 (+) 495 WP_088462390.1 L,D-transpeptidase family protein -
  AB3D65_RS09285 (AB3D65_09285) - 1898976..1900268 (+) 1293 WP_076424037.1 MFS transporter -
  AB3D65_RS09290 (AB3D65_09290) kre 1900391..1900855 (+) 465 WP_003154622.1 YkyB family protein Regulator
  AB3D65_RS09295 (AB3D65_09295) cheV 1900898..1901809 (-) 912 WP_039251615.1 chemotaxis protein CheV -
  AB3D65_RS09300 (AB3D65_09300) - 1901998..1902159 (+) 162 WP_007409608.1 hypothetical protein -
  AB3D65_RS09305 (AB3D65_09305) - 1902360..1903573 (+) 1214 Protein_1781 aminotransferase A -
  AB3D65_RS09310 (AB3D65_09310) - 1903554..1905374 (-) 1821 WP_369546739.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1030801 AB3D65_RS09290 WP_003154622.1 1900391..1900855(+) (kre) [Bacillus velezensis strain BP1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1030801 AB3D65_RS09290 WP_003154622.1 1900391..1900855(+) (kre) [Bacillus velezensis strain BP1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment