Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB3D65_RS09190 Genome accession   NZ_CP165606
Coordinates   1884394..1884990 (-) Length   198 a.a.
NCBI ID   WP_059367090.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879394..1889990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS09165 (AB3D65_09165) mobB 1879770..1880291 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AB3D65_RS09170 (AB3D65_09170) glp 1880252..1881544 (-) 1293 WP_308825701.1 gephyrin-like molybdotransferase Glp -
  AB3D65_RS09175 (AB3D65_09175) - 1881562..1882581 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  AB3D65_RS09180 (AB3D65_09180) - 1882633..1883235 (-) 603 WP_007611112.1 molybdenum cofactor guanylyltransferase -
  AB3D65_RS09185 (AB3D65_09185) - 1883381..1884373 (+) 993 WP_369546735.1 sporulation protein -
  AB3D65_RS09190 (AB3D65_09190) rok 1884394..1884990 (-) 597 WP_059367090.1 transcriptional regulator Rok Regulator
  AB3D65_RS09195 (AB3D65_09195) - 1885442..1885900 (-) 459 WP_369546736.1 TlpA disulfide reductase family protein -
  AB3D65_RS09200 (AB3D65_09200) - 1886188..1886994 (+) 807 WP_169509821.1 mechanosensitive ion channel family protein -
  AB3D65_RS09205 (AB3D65_09205) - 1887028..1887273 (-) 246 WP_003154596.1 YkuS family protein -
  AB3D65_RS09210 (AB3D65_09210) - 1887334..1888458 (-) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  AB3D65_RS09215 (AB3D65_09215) dapD 1888529..1889239 (-) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB3D65_RS09220 (AB3D65_09220) - 1889321..1889776 (-) 456 WP_007409622.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22552.60 Da        Isoelectric Point: 9.6909

>NTDB_id=1030800 AB3D65_RS09190 WP_059367090.1 1884394..1884990(-) (rok) [Bacillus velezensis strain BP1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKNDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1030800 AB3D65_RS09190 WP_059367090.1 1884394..1884990(-) (rok) [Bacillus velezensis strain BP1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAATGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment