Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB3D65_RS07680 Genome accession   NZ_CP165606
Coordinates   1474894..1475328 (-) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1469894..1480328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS07645 (AB3D65_07645) - 1469908..1470261 (+) 354 WP_151296525.1 DMT family transporter -
  AB3D65_RS07650 (AB3D65_07650) - 1470275..1470727 (-) 453 WP_369546668.1 OsmC family protein -
  AB3D65_RS07655 (AB3D65_07655) - 1470786..1471493 (-) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  AB3D65_RS07660 (AB3D65_07660) - 1471749..1471982 (-) 234 WP_015239897.1 hypothetical protein -
  AB3D65_RS07665 (AB3D65_07665) - 1472161..1473489 (+) 1329 WP_369546669.1 S8 family peptidase -
  AB3D65_RS07670 (AB3D65_07670) - 1473683..1474045 (+) 363 WP_007410383.1 hypothetical protein -
  AB3D65_RS07675 (AB3D65_07675) - 1474079..1474834 (-) 756 WP_369546670.1 YoaK family protein -
  AB3D65_RS07680 (AB3D65_07680) nucA/comI 1474894..1475328 (-) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB3D65_RS07685 (AB3D65_07685) - 1475617..1476828 (+) 1212 WP_369546671.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=1030794 AB3D65_RS07680 WP_003154085.1 1474894..1475328(-) (nucA/comI) [Bacillus velezensis strain BP1]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1030794 AB3D65_RS07680 WP_003154085.1 1474894..1475328(-) (nucA/comI) [Bacillus velezensis strain BP1]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGAGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment