Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3D65_RS04570 Genome accession   NZ_CP165606
Coordinates   805809..807539 (+) Length   576 a.a.
NCBI ID   WP_007408359.1    Uniprot ID   I2C7K7
Organism   Bacillus velezensis strain BP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 800809..812539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS04545 (AB3D65_04545) - 801210..801464 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  AB3D65_RS04550 (AB3D65_04550) - 801454..802344 (+) 891 WP_007408353.1 polyprenyl synthetase family protein -
  AB3D65_RS04555 (AB3D65_04555) dxs 802488..804389 (+) 1902 WP_021494304.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB3D65_RS04560 (AB3D65_04560) - 804386..805231 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  AB3D65_RS04565 (AB3D65_04565) ahrC 805328..805777 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  AB3D65_RS04570 (AB3D65_04570) recN 805809..807539 (+) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  AB3D65_RS04575 (AB3D65_04575) spoIVB 807702..808982 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  AB3D65_RS04580 (AB3D65_04580) spo0A 809263..810063 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  AB3D65_RS04585 (AB3D65_04585) alr 810212..811393 (-) 1182 WP_369546446.1 alanine racemase -
  AB3D65_RS04590 (AB3D65_04590) - 811570..811782 (-) 213 WP_007612499.1 spore germination protein -
  AB3D65_RS04595 (AB3D65_04595) - 811908..812120 (-) 213 WP_007408362.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64079.91 Da        Isoelectric Point: 4.7628

>NTDB_id=1030791 AB3D65_RS04570 WP_007408359.1 805809..807539(+) (recN) [Bacillus velezensis strain BP1]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDRFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1030791 AB3D65_RS04570 WP_007408359.1 805809..807539(+) (recN) [Bacillus velezensis strain BP1]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATTAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGATAAACACTTAGAGCTGTTGGACAGGTTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGTAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTAGAGGATGCAACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCTTGGGCTA
AGAAACTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATTATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCCATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCCAAACAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887

Multiple sequence alignment