Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB3D65_RS04075 Genome accession   NZ_CP165606
Coordinates   724006..724773 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain BP1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 719006..729773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS04045 (AB3D65_04045) - 719289..721421 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  AB3D65_RS04050 (AB3D65_04050) ybeY 721422..721895 (+) 474 WP_174747053.1 rRNA maturation RNase YbeY -
  AB3D65_RS04055 (AB3D65_04055) - 721876..722250 (+) 375 WP_369547606.1 diacylglycerol kinase family protein -
  AB3D65_RS04060 (AB3D65_04060) - 722374..722784 (+) 411 WP_003152976.1 cytidine deaminase -
  AB3D65_RS04065 (AB3D65_04065) era 722765..723670 (+) 906 WP_007408285.1 GTPase Era -
  AB3D65_RS04070 (AB3D65_04070) - 723826..723969 (+) 144 WP_007408286.1 YqzL family protein -
  AB3D65_RS04075 (AB3D65_04075) recO 724006..724773 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  AB3D65_RS04080 (AB3D65_04080) glyQ 725075..725962 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  AB3D65_RS04085 (AB3D65_04085) glyS 725955..727994 (+) 2040 WP_369546417.1 glycine--tRNA ligase subunit beta -
  AB3D65_RS04090 (AB3D65_04090) ccpN 728095..728733 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  AB3D65_RS04095 (AB3D65_04095) - 728759..729571 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=1030783 AB3D65_RS04075 WP_007408287.1 724006..724773(+) (recO) [Bacillus velezensis strain BP1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1030783 AB3D65_RS04075 WP_007408287.1 724006..724773(+) (recO) [Bacillus velezensis strain BP1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTATGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment