Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB3D65_RS03270 Genome accession   NZ_CP165606
Coordinates   574759..575511 (+) Length   250 a.a.
NCBI ID   WP_020956151.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569759..580511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS03255 (AB3D65_03255) - 569982..570173 (-) 192 WP_003152639.1 hypothetical protein -
  AB3D65_RS03260 (AB3D65_03260) - 570626..573268 (+) 2643 WP_151296300.1 valine--tRNA ligase -
  AB3D65_RS03265 (AB3D65_03265) - 573327..574619 (+) 1293 WP_369546365.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AB3D65_RS03270 (AB3D65_03270) comC 574759..575511 (+) 753 WP_020956151.1 prepilin peptidase Machinery gene
  AB3D65_RS03275 (AB3D65_03275) - 575638..576639 (+) 1002 WP_369546367.1 SPOR domain-containing protein -
  AB3D65_RS03280 (AB3D65_03280) - 576780..577349 (+) 570 WP_369546368.1 Maf family protein -
  AB3D65_RS03285 (AB3D65_03285) radC 577381..578076 (+) 696 WP_007408165.1 RadC family protein -
  AB3D65_RS03290 (AB3D65_03290) mreB 578168..579181 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AB3D65_RS03295 (AB3D65_03295) mreC 579212..580075 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27129.84 Da        Isoelectric Point: 9.5938

>NTDB_id=1030776 AB3D65_RS03270 WP_020956151.1 574759..575511(+) (comC) [Bacillus velezensis strain BP1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1030776 AB3D65_RS03270 WP_020956151.1 574759..575511(+) (comC) [Bacillus velezensis strain BP1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGCTTATTTACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCTCTTTTCATCGCCG
GCCGTATGTTTTCTCCGTTGGGTTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTCCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment