Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB6808_RS06230 Genome accession   NZ_CP165599
Coordinates   1470030..1471403 (+) Length   457 a.a.
NCBI ID   WP_195586214.1    Uniprot ID   -
Organism   Parabacteroides goldsteinii strain WXC08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465030..1476403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6808_RS06210 (AB6808_06210) - 1465370..1465651 (-) 282 WP_007653559.1 HU family DNA-binding protein -
  AB6808_RS06215 (AB6808_06215) - 1466305..1468425 (+) 2121 WP_007659141.1 KamA family radical SAM protein -
  AB6808_RS06220 (AB6808_06220) - 1468461..1469003 (+) 543 WP_007659143.1 ferredoxin domain-containing protein -
  AB6808_RS06225 (AB6808_06225) - 1469039..1469995 (+) 957 WP_007659146.1 hypothetical protein -
  AB6808_RS06230 (AB6808_06230) radA 1470030..1471403 (+) 1374 WP_195586214.1 DNA repair protein RadA Machinery gene
  AB6808_RS06235 (AB6808_06235) - 1471416..1473200 (+) 1785 WP_195586213.1 hypothetical protein -
  AB6808_RS06240 (AB6808_06240) - 1473197..1473895 (+) 699 WP_010803446.1 hypothetical protein -
  AB6808_RS06245 (AB6808_06245) - 1473902..1475482 (+) 1581 WP_007659155.1 NAD(P)/FAD-dependent oxidoreductase -
  AB6808_RS06250 (AB6808_06250) - 1475537..1475980 (+) 444 Protein_1215 VOC family protein -
  AB6808_RS06255 (AB6808_06255) - 1475987..1476379 (-) 393 WP_007659163.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50144.87 Da        Isoelectric Point: 6.4011

>NTDB_id=1030701 AB6808_RS06230 WP_195586214.1 1470030..1471403(+) (radA) [Parabacteroides goldsteinii strain WXC08]
MAKTKTVYVCSNCGADSPKWVGKCPNCGEWNTYVEEIVATKEPSAKRIIPGITETGKVRPVLLRDITSEEESRIDLKDEE
LNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLNNLKTLYVSGEESSRQLKLRADRIAHENPECFILSETNLEQIFV
QARNVQPDLLIIDSIQTIYTELVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFE
GDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNHEGLSGVAIAAAIEGIRPFLIETQALVSSAVYG
TPQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISAILSSSLDISIEQGVCMCGEVGLSG
EIRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTNKCKIQIVQVRKVEEAFRHLFG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1030701 AB6808_RS06230 WP_195586214.1 1470030..1471403(+) (radA) [Parabacteroides goldsteinii strain WXC08]
ATGGCTAAGACAAAAACAGTATATGTCTGCTCCAATTGCGGAGCAGACTCTCCTAAGTGGGTCGGTAAATGTCCGAATTG
CGGCGAATGGAACACCTATGTGGAAGAAATCGTTGCAACCAAAGAACCTTCTGCAAAACGTATTATTCCCGGTATAACAG
AAACGGGTAAAGTACGTCCCGTCCTGTTACGTGATATTACCTCCGAAGAAGAATCTCGGATTGATTTGAAAGATGAAGAA
CTGAACCGTGTCCTGGGAGGCGGTTTGGTGAAAGGCTCGTTGGTGCTGATTGGCGGTGAACCGGGTATCGGTAAGTCGAC
TTTAGTCCTGCAAACAGTTCTGGGATTGAACAATCTCAAGACATTATATGTATCGGGTGAGGAAAGCAGTCGCCAGCTGA
AACTGCGTGCCGACCGTATCGCCCACGAAAATCCGGAATGCTTCATTCTGAGTGAAACGAATCTGGAACAGATATTTGTC
CAGGCCCGTAACGTACAGCCTGATTTACTGATTATAGACTCTATCCAGACAATCTATACAGAACTCGTTGAATCTTCTCC
CGGCAGCGTCTCACAGGTTCGTGAGTGTAGTGCAGCAATCCTTAAATATGCCAAAGAGAGCGGTGTCCCTGTTCTGCTGA
TAGGCCATATTAATAAAGAAGGAAGTATTGCCGGGCCGAAAGTACTGGAACATATTGTCGATACCGTTCTTCAGTTTGAA
GGCGATCAACATTATATGTACCGTATTCTCCGGAGTATCAAAAACCGTTTCGGCAGCACGGCTGAATTGGGTATTTATGA
GATGCGTCAGGATGGCTTGCGTGAAGTCAGCAACCCGTCCGAGTTGTTGCTGACACAGAACCATGAAGGATTGAGCGGTG
TGGCAATTGCTGCCGCCATCGAAGGCATACGTCCTTTCCTGATAGAAACACAGGCGCTGGTAAGTTCGGCTGTCTATGGA
ACTCCGCAACGCAGTGCGACGGGTTTTGATTTGCGAAGAATGAATATGCTGCTGGCTGTGTTGGAGAAACGTGCCGGATT
CAAGTTGATACAGAAAGACGTGTTCCTGAACATTGCCGGGGGACTGAAGGTCAACGACCCGGCTATCGACCTGGCTGTTA
TCAGCGCTATCCTTTCGTCGAGTCTCGATATCAGTATCGAACAAGGCGTTTGTATGTGTGGCGAGGTCGGCTTGTCGGGC
GAAATCCGTCCGGTCAACCGCATCGAACAACGGATTCTGGAAGCAGAGAAGCTGGGCTTTTCACGCATCATCATCCCTCA
CAATAACCTGAAAGGGTTTGATACGAATAAATGTAAGATACAAATCGTACAGGTCAGAAAGGTGGAAGAAGCTTTCCGGC
ATTTGTTCGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.852

100

0.521
  radA Streptococcus mitis SK321

49.237

100

0.495
  radA Streptococcus mitis NCTC 12261

49.237

100

0.495
  radA Streptococcus pneumoniae Rx1

49.127

100

0.492
  radA Streptococcus pneumoniae D39

49.127

100

0.492
  radA Streptococcus pneumoniae R6

49.127

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.127

100

0.492

Multiple sequence alignment