Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB6L51_RS10555 Genome accession   NZ_CP163562
Coordinates   2065474..2066109 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain BC255T1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2060474..2071109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS10515 (AB6L51_10530) - 2060657..2061775 (+) 1119 WP_407974410.1 NADH-dependent flavin oxidoreductase -
  AB6L51_RS10520 (AB6L51_10535) - 2061827..2062333 (-) 507 WP_079920158.1 PTS glucose transporter subunit IIA -
  AB6L51_RS10525 (AB6L51_10540) - 2062502..2062921 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  AB6L51_RS10530 (AB6L51_10545) - 2062943..2063374 (-) 432 WP_025207531.1 YppG family protein -
  AB6L51_RS10535 (AB6L51_10550) - 2063483..2063863 (-) 381 WP_407974411.1 YppE family protein -
  AB6L51_RS10540 (AB6L51_10555) - 2063913..2064146 (-) 234 WP_231131595.1 DUF5446 family protein -
  AB6L51_RS10545 (AB6L51_10560) sspM 2064343..2064447 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  AB6L51_RS10550 (AB6L51_10565) - 2064471..2065427 (-) 957 WP_008344611.1 DUF2515 domain-containing protein -
  AB6L51_RS10555 (AB6L51_10570) recU 2065474..2066109 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  AB6L51_RS10560 (AB6L51_10575) - 2066129..2068819 (+) 2691 WP_407974412.1 PBP1A family penicillin-binding protein -
  AB6L51_RS10565 (AB6L51_10580) - 2068855..2069364 (-) 510 WP_212338099.1 YpoC family protein -
  AB6L51_RS10570 (AB6L51_10585) nth 2069361..2070023 (-) 663 WP_008344602.1 endonuclease III -
  AB6L51_RS10575 (AB6L51_10590) - 2070041..2070745 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=1030671 AB6L51_RS10555 WP_017359733.1 2065474..2066109(+) (recU) [Bacillus altitudinis strain BC255T1]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1030671 AB6L51_RS10555 WP_017359733.1 2065474..2066109(+) (recU) [Bacillus altitudinis strain BC255T1]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATTAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAC
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAGGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment