Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB6L51_RS09050 Genome accession   NZ_CP163562
Coordinates   1772541..1772921 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BC255T1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1767541..1777921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS09040 (AB6L51_09045) - 1769264..1770172 (+) 909 WP_108611268.1 serine protease -
  AB6L51_RS09045 (AB6L51_09050) - 1770319..1772313 (+) 1995 WP_108611267.1 glycosyltransferase family 39 protein -
  AB6L51_RS09050 (AB6L51_09055) nucA/comI 1772541..1772921 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB6L51_RS09055 (AB6L51_09060) - 1773065..1773913 (+) 849 WP_108611265.1 STAS domain-containing protein -
  AB6L51_RS09060 (AB6L51_09065) - 1773946..1774488 (-) 543 WP_076821645.1 IseA DL-endopeptidase inhibitor family protein -
  AB6L51_RS09065 (AB6L51_09070) - 1774785..1775228 (+) 444 WP_008343821.1 hypothetical protein -
  AB6L51_RS09070 (AB6L51_09075) lexA 1775276..1775896 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  AB6L51_RS09075 (AB6L51_09080) yneA 1776056..1776367 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  AB6L51_RS09080 (AB6L51_09085) - 1776385..1777032 (+) 648 WP_025207396.1 recombinase family protein -
  AB6L51_RS09085 (AB6L51_09090) - 1777102..1777332 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=1030670 AB6L51_RS09050 WP_224559893.1 1772541..1772921(+) (nucA/comI) [Bacillus altitudinis strain BC255T1]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1030670 AB6L51_RS09050 WP_224559893.1 1772541..1772921(+) (nucA/comI) [Bacillus altitudinis strain BC255T1]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment