Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB6L51_RS07345 Genome accession   NZ_CP163562
Coordinates   1424176..1424454 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus altitudinis strain BC255T1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419176..1429454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS07320 (AB6L51_07325) - 1419267..1419542 (-) 276 WP_008345136.1 hypothetical protein -
  AB6L51_RS07325 (AB6L51_07330) - 1419687..1421306 (+) 1620 WP_007498620.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB6L51_RS07330 (AB6L51_07335) - 1421347..1422579 (-) 1233 WP_048003196.1 aminopeptidase -
  AB6L51_RS07335 (AB6L51_07340) - 1422686..1422817 (-) 132 WP_003210922.1 protein YkpC -
  AB6L51_RS07340 (AB6L51_07345) mreBH 1422892..1423899 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  AB6L51_RS07345 (AB6L51_07350) abrB 1424176..1424454 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB6L51_RS07350 (AB6L51_07355) - 1424599..1425888 (+) 1290 WP_007498613.1 ATP-binding protein -
  AB6L51_RS07355 (AB6L51_07360) - 1425916..1426758 (+) 843 WP_046343442.1 gamma-glutamylcyclotransferase -
  AB6L51_RS07360 (AB6L51_07365) - 1426796..1427464 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=1030665 AB6L51_RS07345 WP_008345129.1 1424176..1424454(+) (abrB) [Bacillus altitudinis strain BC255T1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1030665 AB6L51_RS07345 WP_008345129.1 1424176..1424454(+) (abrB) [Bacillus altitudinis strain BC255T1]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment