Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AB6L51_RS06935 Genome accession   NZ_CP163562
Coordinates   1346223..1348328 (-) Length   701 a.a.
NCBI ID   WP_252225055.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BC255T1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341223..1353328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS06910 (AB6L51_06915) - 1341475..1341717 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AB6L51_RS06915 (AB6L51_06920) - 1341769..1343268 (-) 1500 WP_008346092.1 ATP-binding protein -
  AB6L51_RS06920 (AB6L51_06925) - 1343473..1343928 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB6L51_RS06925 (AB6L51_06930) motB 1344108..1344872 (-) 765 WP_017367125.1 flagellar motor protein MotB -
  AB6L51_RS06930 (AB6L51_06935) motA 1344865..1345659 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  AB6L51_RS06935 (AB6L51_06940) clpC 1346223..1348328 (-) 2106 WP_252225055.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB6L51_RS06940 (AB6L51_06945) - 1348574..1349617 (+) 1044 WP_048003074.1 membrane protein -
  AB6L51_RS06945 (AB6L51_06950) queC 1349892..1350548 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  AB6L51_RS06950 (AB6L51_06955) queD 1350549..1350989 (+) 441 WP_046527711.1 6-carboxytetrahydropterin synthase QueD -
  AB6L51_RS06955 (AB6L51_06960) queE 1350982..1351713 (+) 732 WP_024719652.1 7-carboxy-7-deazaguanine synthase QueE -
  AB6L51_RS06960 (AB6L51_06965) queF 1351729..1352226 (+) 498 WP_003211403.1 preQ(1) synthase -
  AB6L51_RS06965 (AB6L51_06970) - 1352485..1352703 (+) 219 WP_017367128.1 hypothetical protein -
  AB6L51_RS06970 (AB6L51_06975) - 1352803..1353327 (-) 525 WP_035392243.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78190.80 Da        Isoelectric Point: 5.1807

>NTDB_id=1030662 AB6L51_RS06935 WP_252225055.1 1346223..1348328(-) (clpC) [Bacillus altitudinis strain BC255T1]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHI
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=1030662 AB6L51_RS06935 WP_252225055.1 1346223..1348328(-) (clpC) [Bacillus altitudinis strain BC255T1]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACGATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAAGAACGGATGAAGCAATTAATTAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTTTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCTGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATCGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTTGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAATACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGTAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAATTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACATC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAAGATCAAATGACGGACATCTTACTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.834

100

0.599
  clpE Streptococcus mutans UA159

56.376

100

0.599
  clpE Streptococcus pneumoniae Rx1

55.708

100

0.578
  clpE Streptococcus pneumoniae D39

55.708

100

0.578
  clpE Streptococcus pneumoniae R6

55.708

100

0.578
  clpE Streptococcus pneumoniae TIGR4

55.708

100

0.578
  clpC Bacillus subtilis subsp. subtilis str. 168

53.651

95.72

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.855

90.728

0.425
  clpC Streptococcus thermophilus LMD-9

44.427

92.154

0.409
  clpC Streptococcus thermophilus LMG 18311

44.272

92.154

0.408
  clpC Streptococcus pneumoniae TIGR4

44.479

90.442

0.402
  clpC Streptococcus pneumoniae Rx1

44.674

89.729

0.401
  clpC Streptococcus pneumoniae D39

44.674

89.729

0.401
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment