Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AACH48_RS19655 Genome accession   NZ_AP027942
Coordinates   4284499..4285938 (-) Length   479 a.a.
NCBI ID   WP_026458931.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain VA84     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4279499..4290938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH48_RS19625 (VAWG005_37920) - 4279774..4280514 (+) 741 WP_019839172.1 KDGP aldolase family protein -
  AACH48_RS19630 (VAWG005_37930) - 4280619..4282523 (+) 1905 WP_019839173.1 BglG family transcription antiterminator -
  AACH48_RS19635 (VAWG005_37940) npr 4282539..4282811 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  AACH48_RS19640 (VAWG005_37950) rapZ 4282832..4283698 (-) 867 WP_005305946.1 RNase adapter RapZ -
  AACH48_RS19645 (VAWG005_37960) ptsN 4283741..4284187 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AACH48_RS19650 (VAWG005_37970) hpf 4284190..4284477 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  AACH48_RS19655 (VAWG005_37980) rpoN/rpoN1 4284499..4285938 (-) 1440 WP_026458931.1 RNA polymerase factor sigma-54 Machinery gene
  AACH48_RS19660 (VAWG005_37990) lptB 4286004..4286729 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  AACH48_RS19665 (VAWG005_38000) lptA 4286733..4287260 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  AACH48_RS19670 (VAWG005_38010) lptC 4287247..4287807 (-) 561 WP_010635927.1 LPS export ABC transporter periplasmic protein LptC -
  AACH48_RS19675 (VAWG005_38020) kdsC 4287804..4288358 (-) 555 WP_019839176.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AACH48_RS19680 (VAWG005_38030) - 4288358..4289353 (-) 996 WP_026458932.1 KpsF/GutQ family sugar-phosphate isomerase -
  AACH48_RS19685 (VAWG005_38040) mlaF 4289561..4290361 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53862.81 Da        Isoelectric Point: 4.3584

>NTDB_id=103066 AACH48_RS19655 WP_026458931.1 4284499..4285938(-) (rpoN/rpoN1) [Aeromonas dhakensis strain VA84]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLRENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=103066 AACH48_RS19655 WP_026458931.1 4284499..4285938(-) (rpoN/rpoN1) [Aeromonas dhakensis strain VA84]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCAGTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACAGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTGACCCCGTTCA
GCGATGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGACGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGGCAGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAGAGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAAACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAACCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.669

100

0.484

Multiple sequence alignment