Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   AB6W33_RS01020 Genome accession   NZ_CP163561
Coordinates   163673..164719 (+) Length   348 a.a.
NCBI ID   WP_373660948.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 158673..169719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS01005 (AB6W33_01010) - 159931..161586 (+) 1656 WP_001118749.1 peptide ABC transporter substrate-binding protein -
  AB6W33_RS01010 (AB6W33_01015) - 161705..162619 (+) 915 WP_000598965.1 ABC transporter permease -
  AB6W33_RS01015 (AB6W33_01020) - 162629..163660 (+) 1032 WP_000764052.1 ABC transporter permease -
  AB6W33_RS01020 (AB6W33_01025) oppD 163673..164719 (+) 1047 WP_373660948.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS01025 (AB6W33_01030) amiF 164719..165651 (+) 933 WP_000138506.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38714.14 Da        Isoelectric Point: 4.7644

>NTDB_id=1030592 AB6W33_RS01020 WP_373660948.1 163673..164719(+) (oppD) [Streptococcus agalactiae strain GBS-B4009]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGTQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1030592 AB6W33_RS01020 WP_373660948.1 163673..164719(+) (oppD) [Streptococcus agalactiae strain GBS-B4009]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCACGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGCCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.713

0.787
  amiE Streptococcus salivarius strain HSISS4

55.162

97.414

0.537
  amiE Streptococcus thermophilus LMG 18311

54.572

97.414

0.532
  amiE Streptococcus thermophilus LMD-9

54.572

97.414

0.532

Multiple sequence alignment