Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   AB6N81_RS09370 Genome accession   NZ_CP163559
Coordinates   1913895..1914791 (+) Length   298 a.a.
NCBI ID   WP_369351809.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain B273     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1908895..1919791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N81_RS09350 (AB6N81_09315) - 1909584..1911128 (+) 1545 WP_203162328.1 NAD(P)H-binding protein -
  AB6N81_RS09355 (AB6N81_09320) - 1911251..1912720 (-) 1470 WP_002458296.1 alkaline phosphatase -
  AB6N81_RS09360 (AB6N81_09325) - 1913017..1913193 (+) 177 WP_002496677.1 hypothetical protein -
  AB6N81_RS09365 (AB6N81_09330) braR 1913224..1913889 (+) 666 WP_002447011.1 response regulator transcription factor Regulator
  AB6N81_RS09370 (AB6N81_09335) braS 1913895..1914791 (+) 897 WP_369351809.1 sensor histidine kinase Regulator
  AB6N81_RS09375 (AB6N81_09340) - 1914902..1915651 (+) 750 WP_369351811.1 ABC transporter ATP-binding protein -
  AB6N81_RS09380 (AB6N81_09345) - 1915653..1917665 (+) 2013 WP_203162329.1 FtsX-like permease family protein -
  AB6N81_RS09385 (AB6N81_09350) - 1917769..1918359 (+) 591 WP_038812676.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34917.52 Da        Isoelectric Point: 6.5021

>NTDB_id=1030584 AB6N81_RS09370 WP_369351809.1 1913895..1914791(+) (braS) [Staphylococcus epidermidis strain B273]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSDDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQYIANHLNIEVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1030584 AB6N81_RS09370 WP_369351809.1 1913895..1914791(+) (braS) [Staphylococcus epidermidis strain B273]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAAACGCAAATCCATTATGAAAAAAGTGATGACAT
CATTTTAACCGACACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACAGGTATAGGTTTATTTATAGT
GCAATACATTGCAAATCATTTAAATATAGAAGTAACTGTACAATCAGAGTTAAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment