Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AB6N81_RS02315 | Genome accession | NZ_CP163559 |
| Coordinates | 418063..419037 (+) | Length | 324 a.a. |
| NCBI ID | WP_002446534.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain B273 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 413063..424037
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6N81_RS02280 (AB6N81_02275) | rpmG | 413545..413694 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| AB6N81_RS02285 (AB6N81_02280) | - | 413875..414426 (+) | 552 | WP_002446539.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| AB6N81_RS02290 (AB6N81_02285) | - | 414427..415887 (+) | 1461 | WP_162161906.1 | rhomboid family intramembrane serine protease | - |
| AB6N81_RS02295 (AB6N81_02290) | - | 415871..416071 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| AB6N81_RS02300 (AB6N81_02295) | - | 416071..417057 (+) | 987 | WP_002496885.1 | ROK family glucokinase | - |
| AB6N81_RS02305 (AB6N81_02300) | - | 417057..417383 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| AB6N81_RS02310 (AB6N81_02305) | - | 417383..418006 (+) | 624 | WP_369352206.1 | MBL fold metallo-hydrolase | - |
| AB6N81_RS02315 (AB6N81_02310) | comGA | 418063..419037 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB6N81_RS02320 (AB6N81_02315) | comGB | 419009..420076 (+) | 1068 | WP_145368252.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB6N81_RS02325 (AB6N81_02320) | comGC | 420094..420411 (+) | 318 | Protein_382 | competence type IV pilus major pilin ComGC | - |
| AB6N81_RS02330 (AB6N81_02325) | comGD | 420401..420838 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| AB6N81_RS02335 (AB6N81_02330) | - | 420825..421118 (+) | 294 | WP_020367648.1 | hypothetical protein | - |
| AB6N81_RS02340 (AB6N81_02335) | - | 421042..421533 (+) | 492 | WP_162153693.1 | competence type IV pilus minor pilin ComGF | - |
| AB6N81_RS02345 (AB6N81_02340) | - | 421698..422210 (+) | 513 | WP_002496881.1 | shikimate kinase | - |
| AB6N81_RS02350 (AB6N81_02345) | gcvT | 422428..423519 (+) | 1092 | WP_002501008.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37261.33 Da Isoelectric Point: 8.8257
>NTDB_id=1030568 AB6N81_RS02315 WP_002446534.1 418063..419037(+) (comGA) [Staphylococcus epidermidis strain B273]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=1030568 AB6N81_RS02315 WP_002446534.1 418063..419037(+) (comGA) [Staphylococcus epidermidis strain B273]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGCGAATCATATGAATTTAAAGATTTTAAACACTTCATGAAAAAGAAACAAGGTCTGCTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGCATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGCGAATCATATGAATTTAAAGATTTTAAACACTTCATGAAAAAGAAACAAGGTCTGCTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGCATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.062 |
100 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.062 |
100 |
0.701 |