Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EDCC5055_RS00130 Genome accession   NZ_LT671859
Coordinates   29455..30255 (+) Length   266 a.a.
NCBI ID   WP_000088648.1    Uniprot ID   A0A0H2XG71
Organism   Staphylococcus aureus isolate Clinical isolate     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 24455..35255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EDCC5055_RS00115 (EDCC5055_00023) walK 25123..26949 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  EDCC5055_RS00120 (EDCC5055_00024) yycH 26942..28276 (+) 1335 WP_001060131.1 two-component system activity regulator YycH -
  EDCC5055_RS00125 (EDCC5055_00025) - 28277..29065 (+) 789 WP_001104172.1 two-component system regulatory protein YycI -
  EDCC5055_RS00130 (EDCC5055_00026) vicX 29455..30255 (+) 801 WP_000088648.1 MBL fold metallo-hydrolase Regulator
  EDCC5055_RS00135 (EDCC5055_00027) adsA 30483..32801 (+) 2319 WP_000645780.1 LPXTG-anchored adenosine synthase AdsA -
  EDCC5055_RS00140 (EDCC5055_00028) rlmH 33169..33648 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EDCC5055_RS00145 (EDCC5055_00029) - 33970..35226 (+) 1257 WP_000566670.1 MrcB family domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30327.55 Da        Isoelectric Point: 6.3392

>NTDB_id=1030433 EDCC5055_RS00130 WP_000088648.1 29455..30255(+) (vicX) [Staphylococcus aureus isolate Clinical isolate]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAAHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1030433 EDCC5055_RS00130 WP_000088648.1 29455..30255(+) (vicX) [Staphylococcus aureus isolate Clinical isolate]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGAAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTATGGATCAGAAATTCATTTTTAATCC
TTATGAAACAAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCAATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGCTCATGCAATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACCTATCGCATTTATCACAAGACAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.416

96.617

0.477