Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3Q54_RS08270 Genome accession   NZ_CP163515
Coordinates   1633092..1634900 (-) Length   602 a.a.
NCBI ID   WP_369351558.1    Uniprot ID   -
Organism   Ligilactobacillus agilis strain W70     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628092..1639900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Q54_RS08245 (AB3Q54_08245) mgtE 1628503..1629867 (-) 1365 WP_167589030.1 magnesium transporter -
  AB3Q54_RS08250 (AB3Q54_08250) - 1629883..1630776 (-) 894 WP_172573271.1 RluA family pseudouridine synthase -
  AB3Q54_RS08255 (AB3Q54_08255) - 1630766..1631584 (-) 819 WP_056976982.1 NAD kinase -
  AB3Q54_RS08260 (AB3Q54_08260) - 1631598..1632239 (-) 642 WP_089144115.1 GTP pyrophosphokinase family protein -
  AB3Q54_RS08265 (AB3Q54_08265) - 1632404..1633042 (+) 639 WP_369352313.1 DsbA family protein -
  AB3Q54_RS08270 (AB3Q54_08270) pepF 1633092..1634900 (-) 1809 WP_369351558.1 oligoendopeptidase F Regulator
  AB3Q54_RS08275 (AB3Q54_08275) - 1634944..1635861 (-) 918 WP_192944997.1 competence protein CoiA -
  AB3Q54_RS08280 (AB3Q54_08280) - 1636033..1636797 (-) 765 WP_192944998.1 adaptor protein MecA -
  AB3Q54_RS08285 (AB3Q54_08285) spxA 1636914..1637315 (-) 402 WP_050612525.1 transcriptional regulator SpxA -
  AB3Q54_RS08290 (AB3Q54_08290) - 1637664..1638224 (+) 561 WP_369351559.1 M15 family metallopeptidase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68860.86 Da        Isoelectric Point: 5.0102

>NTDB_id=1030408 AB3Q54_RS08270 WP_369351558.1 1633092..1634900(-) (pepF) [Ligilactobacillus agilis strain W70]
MTEVKKLPQRKEVPVELTWDLELIFANSGEFDTAVTELEQQATTFLTYQGQVGQSAQTLLTALEAWLDLDRALEKIYVYA
SMKNDQDTKNAEYQALFTRVQKLVAEVSAKIAWFEPELLVLSEETVATYLQVEPKLQQYQHLLEVLLAKKPHILSDKEEA
LLAGASDILGAPENIFGVLNNADFKFAQVSDEAGNKVQLSQGLYGKLLESVNREIRKEAFEKLYLVYHQFRHTLATTLAT
HVRMHNFEAKLRGYNSAQERALASNSIPVKVYTTLLEQVEQHLPLLHRYVELRKKVLGLTELHMYDLYTPLTGKANLAYT
YEEAKQESLKALAVLGDDYLEHVKEAYASRWIDVVENEGKRSGAYSSGVYDTAPYILLNWQDNLDNLFTLVHEMGHSMHT
YLTTHNQPYQYGDYPIFLAEIASTTNENLLTQYLLETQKDPQVQAYVLNHYLDGFKGTVFRQAQFAQFELWLHEQEASGQ
ALTAEKLADYYGKLNQHYYGSAVVNDQQIAYEWARIPHFYYNFYVYQYATGFAAATTLSQNILSKDPAKLTAYLDYLQAG
SSNYPLEVMKQAGVNMEESAYLQEAFKVFEKRLNQLEGLLLK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1030408 AB3Q54_RS08270 WP_369351558.1 1633092..1634900(-) (pepF) [Ligilactobacillus agilis strain W70]
ATGACTGAGGTAAAAAAATTACCCCAAAGAAAAGAAGTTCCCGTAGAATTAACTTGGGATTTAGAGTTGATTTTTGCAAA
TAGCGGTGAATTTGATACCGCTGTTACGGAGTTAGAGCAACAAGCAACAACTTTCTTAACCTATCAAGGCCAAGTAGGAC
AAAGTGCCCAAACATTATTGACGGCTTTAGAAGCGTGGTTAGACTTAGACCGTGCCTTAGAGAAAATCTATGTCTATGCT
AGCATGAAAAATGATCAAGATACTAAAAACGCTGAATATCAAGCGTTATTCACACGGGTTCAAAAGTTAGTGGCGGAAGT
CTCCGCTAAGATAGCTTGGTTTGAACCAGAATTGCTGGTCTTATCCGAAGAAACGGTTGCAACTTACTTACAGGTTGAGC
CCAAGTTACAGCAATATCAACACTTATTGGAGGTGCTATTAGCCAAAAAGCCCCATATTTTAAGCGACAAGGAAGAAGCC
TTGTTAGCAGGAGCTAGTGATATTTTAGGAGCGCCCGAAAATATTTTTGGGGTGTTAAACAATGCCGACTTCAAGTTTGC
GCAAGTTAGTGATGAAGCGGGGAATAAAGTTCAACTATCACAGGGACTTTATGGAAAATTATTAGAATCCGTAAACCGGG
AAATAAGAAAAGAGGCCTTTGAAAAGCTTTACCTAGTCTATCATCAATTTAGACACACCCTGGCTACTACATTAGCTACC
CACGTGCGGATGCATAATTTTGAAGCTAAATTACGTGGTTATAATTCAGCCCAAGAACGAGCCTTGGCAAGTAATTCTAT
TCCGGTTAAAGTATACACCACTTTACTGGAACAGGTTGAACAACACCTACCATTGTTACACCGATATGTTGAATTGAGAA
AAAAGGTCTTAGGCCTAACCGAATTGCATATGTACGATTTGTATACTCCCCTTACAGGTAAAGCCAACTTAGCCTATACC
TACGAGGAAGCTAAGCAAGAGAGTTTAAAGGCGCTAGCGGTTCTTGGCGATGACTATTTAGAACACGTGAAGGAAGCCTA
TGCTAGTCGGTGGATTGATGTGGTTGAAAACGAAGGTAAGAGAAGTGGTGCTTACTCTTCAGGGGTATATGATACTGCAC
CGTATATTTTATTAAACTGGCAAGATAATTTAGATAATTTATTTACACTTGTACATGAAATGGGTCACAGTATGCACACT
TACCTTACAACGCATAACCAACCTTATCAGTATGGAGATTATCCCATCTTTTTAGCAGAAATTGCTTCAACCACTAATGA
GAACTTGCTAACCCAATATTTGTTGGAGACGCAAAAAGATCCGCAAGTACAGGCTTACGTTTTAAATCATTATTTAGATG
GGTTTAAGGGAACCGTGTTTAGACAAGCTCAGTTTGCCCAATTTGAGTTATGGCTACATGAACAAGAGGCTAGTGGCCAG
GCATTAACAGCCGAAAAGTTAGCCGATTATTATGGTAAATTAAACCAACATTATTATGGTTCGGCCGTGGTTAATGACCA
GCAAATTGCCTACGAATGGGCCCGGATTCCTCATTTTTACTATAATTTCTATGTTTATCAATATGCGACGGGATTTGCGG
CGGCAACAACCCTTTCCCAAAACATTTTAAGCAAAGATCCAGCTAAGTTAACTGCTTACCTAGACTATCTTCAAGCGGGT
AGTTCTAACTACCCACTTGAAGTTATGAAACAAGCTGGGGTAAATATGGAAGAAAGTGCCTACCTGCAAGAGGCGTTTAA
AGTATTTGAAAAGCGGTTGAATCAATTAGAGGGTTTATTACTCAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.03

98.671

0.523

Multiple sequence alignment