Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3Q54_RS02250 Genome accession   NZ_CP163515
Coordinates   457287..458663 (+) Length   458 a.a.
NCBI ID   WP_204773121.1    Uniprot ID   -
Organism   Ligilactobacillus agilis strain W70     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 452287..463663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Q54_RS02220 (AB3Q54_02220) - 452819..453667 (-) 849 WP_369351953.1 HAD family hydrolase -
  AB3Q54_RS02225 (AB3Q54_02225) - 453767..454144 (+) 378 Protein_419 VOC family protein -
  AB3Q54_RS02230 (AB3Q54_02230) - 454197..455531 (-) 1335 WP_089144269.1 C1 family peptidase -
  AB3Q54_RS02235 (AB3Q54_02235) rpiA 455598..456281 (-) 684 WP_056975652.1 ribose-5-phosphate isomerase RpiA -
  AB3Q54_RS02240 (AB3Q54_02240) - 456334..456609 (-) 276 WP_056975650.1 GNAT family N-acetyltransferase -
  AB3Q54_RS02245 (AB3Q54_02245) - 456736..457272 (+) 537 WP_172577806.1 dUTP diphosphatase -
  AB3Q54_RS02250 (AB3Q54_02250) radA 457287..458663 (+) 1377 WP_204773121.1 DNA repair protein RadA Machinery gene
  AB3Q54_RS02255 (AB3Q54_02255) - 458695..459819 (+) 1125 WP_050611738.1 PIN/TRAM domain-containing protein -
  AB3Q54_RS02260 (AB3Q54_02260) - 459863..461596 (-) 1734 WP_369351954.1 methyl-accepting chemotaxis protein -
  AB3Q54_RS02265 (AB3Q54_02265) - 461788..462144 (+) 357 WP_302046707.1 DUF1304 domain-containing protein -
  AB3Q54_RS02270 (AB3Q54_02270) - 462202..462618 (-) 417 WP_369351956.1 Rrf2 family transcriptional regulator -
  AB3Q54_RS02275 (AB3Q54_02275) - 462682..463533 (-) 852 WP_369351957.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49513.89 Da        Isoelectric Point: 6.5141

>NTDB_id=1030393 AB3Q54_RS02250 WP_204773121.1 457287..458663(+) (radA) [Ligilactobacillus agilis strain W70]
MAKTKTKYVCQECGYSSPRYLGRCPNCGAWNSLVEEIEEKTSPKAAANARVTISGTKVSPQLIEQVSIEKTPRIKTNLKE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLADLKSRVLYVSGEESASQIKMRADRLGVGGSEFYLYPETDMGAV
RQSISDLKPDYVIIDSVQTMQEPEMTSAVGSVAQIREVTADLMQLAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLY
FEGDKQRTFRILRAVKNRFGSTNEIGIFEMREGGLYEVANPSEIFLEERLQGATGSAVVASLEGTRPILVELQALVTPTA
FGNAKRTTTGLDHNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDKETRASDCFIGELGL
TGEVRTVTRIEQRVAEAAKLGFKRVIVPKNNLDGWDFPEGIQVLGVTTLNEALHIAFD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1030393 AB3Q54_RS02250 WP_204773121.1 457287..458663(+) (radA) [Ligilactobacillus agilis strain W70]
GTGGCGAAAACCAAAACAAAGTATGTCTGCCAGGAATGTGGTTACAGCTCCCCACGGTATTTGGGCCGCTGTCCTAACTG
TGGAGCCTGGAACAGCCTGGTAGAAGAAATCGAAGAAAAGACTAGTCCCAAGGCAGCTGCGAATGCGCGGGTGACCATCA
GTGGTACCAAGGTTAGCCCGCAATTAATCGAGCAAGTTAGCATTGAAAAAACACCCCGCATCAAAACCAACCTAAAAGAA
CTAAACCGGGTGTTAGGCGGGGGGATTGTCCCTGGCTCCTTGGTTTTGATTGGGGGGGACCCGGGAATTGGTAAATCCAC
CCTGTTGTTGCAGGTTTCGGGTCAATTAGCCGACTTAAAGAGCCGGGTCTTATACGTTTCTGGTGAAGAAAGTGCCAGTC
AAATCAAGATGCGGGCGGACCGGCTAGGGGTTGGCGGTAGCGAATTTTACCTCTACCCCGAAACTGATATGGGGGCGGTT
CGTCAAAGTATCAGTGATTTGAAACCAGATTATGTCATTATTGACTCGGTTCAAACCATGCAGGAACCGGAAATGACTTC
GGCTGTCGGCAGCGTTGCCCAAATTAGGGAAGTAACCGCCGATTTGATGCAGTTAGCCAAGACCAACGGCATTACCATCT
TCATTGTTGGCCACGTAACTAAGGGGGGCGCCATTGCTGGGCCCAAGATCTTAGAGCACATGGTTGATACCGTCCTTTAT
TTTGAAGGGGATAAGCAAAGGACCTTTCGGATTTTGCGGGCCGTCAAAAACCGCTTTGGCTCCACCAATGAAATTGGGAT
TTTTGAGATGCGGGAAGGGGGCTTATATGAGGTCGCTAACCCGTCAGAAATCTTTTTGGAAGAACGGCTGCAAGGTGCAA
CCGGGTCGGCAGTGGTGGCTTCACTTGAAGGAACCCGCCCAATTTTGGTTGAACTCCAAGCCCTGGTAACCCCAACTGCC
TTTGGGAATGCTAAGCGGACCACGACCGGTCTTGACCATAACCGGGTTTCGTTGATTATGGCCGTTTTAGAAAAGCGGGC
CGGCTTGCTATTGCAAAATCAGGATGCCTACCTAAAGGCCGCGGGGGGCGTTAAGCTAGACGAACCTGCGATTGACTTAG
CGATTGCAGTTAGTTTGGTGTCCTCTTACCGGGATAAGGAAACCCGGGCGAGCGACTGCTTTATCGGTGAGTTAGGCTTG
ACCGGTGAGGTCCGGACGGTGACTAGGATTGAACAACGGGTGGCAGAAGCCGCTAAGCTAGGCTTTAAGCGGGTAATTGT
CCCTAAAAATAACCTGGATGGCTGGGACTTTCCGGAAGGCATCCAGGTTTTAGGGGTGACGACTTTAAACGAAGCCCTCC
ACATTGCCTTTGACTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.053

99.782

0.679
  radA Streptococcus pneumoniae D39

68.053

99.782

0.679
  radA Streptococcus pneumoniae R6

68.053

99.782

0.679
  radA Streptococcus pneumoniae TIGR4

68.053

99.782

0.679
  radA Streptococcus mitis NCTC 12261

68.053

99.782

0.679
  radA Streptococcus mitis SK321

68.053

99.782

0.679
  radA Bacillus subtilis subsp. subtilis str. 168

64.565

100

0.648

Multiple sequence alignment