Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB6M99_RS09435 Genome accession   NZ_CP163513
Coordinates   1909778..1911139 (-) Length   453 a.a.
NCBI ID   WP_121836032.1    Uniprot ID   A0A3L9DT49
Organism   Streptococcus hillyeri strain S23-3001-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904778..1916139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M99_RS09400 (AB6M99_09400) - 1905213..1906238 (-) 1026 WP_121836025.1 low specificity L-threonine aldolase -
  AB6M99_RS09405 (AB6M99_09405) - 1906254..1906577 (-) 324 WP_121836026.1 AzlD domain-containing protein -
  AB6M99_RS09410 (AB6M99_09410) - 1906570..1907271 (-) 702 WP_121836027.1 AzlC family ABC transporter permease -
  AB6M99_RS09415 (AB6M99_09415) - 1907354..1908016 (-) 663 WP_121836028.1 hypothetical protein -
  AB6M99_RS09420 (AB6M99_09420) - 1908023..1908466 (-) 444 WP_121836029.1 LytTR family DNA-binding domain-containing protein -
  AB6M99_RS09425 (AB6M99_09425) - 1908604..1908909 (-) 306 WP_121836030.1 bacteriocin immunity protein -
  AB6M99_RS09430 (AB6M99_09430) - 1908934..1909647 (-) 714 WP_121836031.1 TIGR00266 family protein -
  AB6M99_RS09435 (AB6M99_09435) radA 1909778..1911139 (-) 1362 WP_121836032.1 DNA repair protein RadA Machinery gene
  AB6M99_RS09440 (AB6M99_09440) - 1911142..1911585 (-) 444 WP_121836033.1 dUTP diphosphatase -
  AB6M99_RS09445 (AB6M99_09445) - 1911675..1912343 (-) 669 WP_369350642.1 ABC transporter ATP-binding protein -
  AB6M99_RS09450 (AB6M99_09450) - 1912343..1913161 (-) 819 WP_369351232.1 ABC transporter permease -
  AB6M99_RS09455 (AB6M99_09455) - 1913137..1913424 (-) 288 WP_369351233.1 hypothetical protein -
  AB6M99_RS09460 (AB6M99_09460) - 1913439..1915223 (-) 1785 WP_121836036.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49374.70 Da        Isoelectric Point: 6.1010

>NTDB_id=1030310 AB6M99_RS09435 WP_121836032.1 1909778..1911139(-) (radA) [Streptococcus hillyeri strain S23-3001-2]
MAKKKSNFICQECGYHSPKYLGRCPNCSAWTSFVEEVEVAEVKNARVSLTGEKTKPTKLKDVSSINYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIE
KIQPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQDAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLQGIEVPNGIEVIGVMTVGEVLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1030310 AB6M99_RS09435 WP_121836032.1 1909778..1911139(-) (radA) [Streptococcus hillyeri strain S23-3001-2]
ATGGCTAAGAAAAAATCAAATTTTATCTGTCAGGAGTGTGGCTACCATTCTCCTAAATATTTAGGGCGCTGCCCGAATTG
TTCCGCTTGGACCTCCTTTGTTGAAGAAGTGGAAGTGGCTGAGGTTAAAAATGCCCGCGTCAGCTTGACGGGTGAGAAAA
CCAAACCGACAAAACTCAAAGATGTTAGCTCTATCAACTACGCTCGTACCAAGACTGATATGGATGAGTTCAACCGTGTC
CTTGGGGGCGGTGTCGTTCCTGGAAGTCTTGTCCTTATTGGTGGTGACCCTGGTATCGGGAAATCAACGCTTCTTCTCCA
AGTTTCAACTCAGTTAGCCAATAAAGGGACGGTTTTATACGTTTCTGGGGAAGAATCGGCAGAGCAGATTAAGCTGCGAA
GTGAACGTCTAGGGGATATCGACAATGAATTTTACCTCTATGCGGAGACCAATATGCAGAGCATCCGCGCGGAAATTGAA
AAAATTCAGCCAGATTTTCTGATTATTGACTCCATTCAAACGATTATGAGTCCAGAGGTATCTAGCGTGCAAGGATCTGT
GTCTCAGGTTCGAGAAGTAACTGCTGAACTCATGCAGTTGGCTAAAACCAATAATATTGCGACCTTTATCGTGGGTCATG
TGACAAAGGAAGGTACTTTAGCTGGACCTCGTATGTTGGAACACATGGTGGATACGGTTCTTTATTTTGAAGGGGAGCGT
CACCATACCTTCCGTATCTTGCGAGCGGTCAAAAATCGTTTTGGCTCAACCAATGAAATCGGTATTTTTGAAATGCAGTC
AGGTGGGCTAGTTGAAGTCCTTAATCCTAGTCAGGTCTTCTTGGAAGAACGTTTAGATGGTGCGACAGGCTCTGCGATTG
TCGTGACGATGGAGGGAACGCGTCCTATCTTGGCAGAGGTGCAAGCCCTCGTAACACCAACTGTTTTTGGAAATGCCAAG
CGGACGACTACAGGTCTTGATTTTAATCGTGTTAGCCTAATTATGGCAGTTTTAGAAAAAAGAGCAGGGCTTCTTTTGCA
AAATCAGGACGCTTACCTCAAGTCTGCTGGTGGGGTTAAATTGGATGAACCAGCCATCGACCTTGCAGTAGCGGTAGCCA
TTGCCTCTAGTTACAAAGAAAAACCAACCAATCCCCAAGATGCCTTTATCGGTGAGATTGGATTAACTGGGGAAATCCGC
CGTGTCACGCGCATTGAGCAACGAATTAACGAGGCGGCAAAACTAGGGTTTACCAAGGTTTATGCTCCTAAAAATTCTTT
GCAAGGCATTGAAGTACCAAACGGTATTGAGGTCATCGGTGTCATGACCGTCGGAGAAGTCTTGAAAAAAGTGTTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L9DT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.381

99.779

0.892
  radA Streptococcus pneumoniae D39

89.381

99.779

0.892
  radA Streptococcus pneumoniae R6

89.381

99.779

0.892
  radA Streptococcus pneumoniae TIGR4

89.381

99.779

0.892
  radA Streptococcus mitis SK321

89.381

99.779

0.892
  radA Streptococcus mitis NCTC 12261

89.159

99.779

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

100

0.634

Multiple sequence alignment