Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AB6M99_RS05475 Genome accession   NZ_CP163513
Coordinates   1168126..1168419 (-) Length   97 a.a.
NCBI ID   WP_121834720.1    Uniprot ID   A0A3L9DYQ6
Organism   Streptococcus hillyeri strain S23-3001-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1166212..1167378 1168126..1168419 flank 748


Gene organization within MGE regions


Location: 1166212..1168419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M99_RS05465 (AB6M99_05465) - 1166212..1167378 (+) 1167 WP_369350352.1 IS30 family transposase -
  AB6M99_RS05470 (AB6M99_05470) - 1167634..1168035 (-) 402 Protein_1065 type I restriction-modification system subunit M N-terminal domain-containing protein -
  AB6M99_RS05475 (AB6M99_05475) HI0659 1168126..1168419 (-) 294 WP_121834720.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10714.44 Da        Isoelectric Point: 6.3630

>NTDB_id=1030294 AB6M99_RS05475 WP_121834720.1 1168126..1168419(-) (HI0659) [Streptococcus hillyeri strain S23-3001-2]
MTTNNPAIGSRWEEVQAELFTPEELRESDLRVAVMLELIKARQEKGISQKKLEQLSGVSQPVIARMESGKTSPQLDTVLK
VLASLGKTLAVVPLEQK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1030294 AB6M99_RS05475 WP_121834720.1 1168126..1168419(-) (HI0659) [Streptococcus hillyeri strain S23-3001-2]
ATGACAACAAACAATCCAGCTATTGGTAGTCGTTGGGAAGAGGTTCAAGCGGAACTCTTTACGCCTGAGGAATTGCGTGA
AAGTGATTTGAGGGTGGCTGTTATGCTTGAACTCATTAAGGCTAGACAGGAAAAGGGTATCAGTCAGAAGAAATTGGAGC
AGCTCAGCGGTGTTAGTCAACCTGTGATTGCTCGGATGGAATCTGGAAAAACCAGTCCGCAACTTGATACCGTTTTGAAA
GTGCTAGCCAGCCTTGGAAAGACCTTAGCTGTTGTGCCTTTGGAGCAGAAATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(39-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L9DYQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.111

92.784

0.567

Multiple sequence alignment